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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:116.1 nTPM
HPA:116.1 nTPM
GTEx:104.2 nTPM
FANTOM5:191.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041981Antibody CAB034929
Glandular cells HighMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.1
overview
Male, age 65
Small intestine sample 232
nTPM: 143.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 102.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 83.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 135.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 104.2
Samples: 187

Max nTPM: 302.5
Min nTPM: 25.3
Std nTPM: 53.7
Median nTPM: 88.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 302.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 246.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 229.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 228.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 215.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 212.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 211.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 207.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 206.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 199.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 195.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 193.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 192.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 191.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 190.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 188.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 183.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 182.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 179.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 179.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 178.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 176.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 175.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 173.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 172.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 170.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 169.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 169.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 168.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 168.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 167.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 166.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 165.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 163.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 163.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 163.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 162.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 161.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 156.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 156.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 152.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 150.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 149.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 146.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 144.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 144.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 143.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 142.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 141.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 139.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 138.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 138.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 138.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 138.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 136.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 135.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 135.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 135.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 132.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 131.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 130.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 127.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 125.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 124.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 122.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 120.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 119.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 119.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 116.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 112.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 110.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 110.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 109.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 108.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 107.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 107.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 107.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 105.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 104.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 103.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 101.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 99.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 98.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 97.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 96.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 96.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 93.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 92.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 91.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 90.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 90.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 88.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 88.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 88.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 85.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 84.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 83.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 83.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 82.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 80.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 80.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 79.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 79.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 77.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 76.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 76.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 76.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 75.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 75.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 74.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 74.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 74.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 73.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 73.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 73.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 72.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 71.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 70.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 70.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 70.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 69.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 69.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 69.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 67.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 67.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 67.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 66.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 66.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 66.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 65.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 64.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 64.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 64.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 62.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 62.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 62.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 61.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 61.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 61.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 61.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 61.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 61.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 60.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 59.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 59.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 58.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 57.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 55.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 55.8
GTEX-1192X-2526-SM-59868 50-59 years, male 55.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 55.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 55.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 54.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 54.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 54.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 53.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 52.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 52.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 52.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 52.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 52.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 51.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 50.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 50.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 50.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 50.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 49.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 47.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 47.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 46.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 46.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 46.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 45.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 45.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 45.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 41.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 40.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 40.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 39.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 36.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 36.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 36.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 36.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 35.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 31.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 31.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 25.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

191.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 191.8
FF:10024-101D6 15,40,85 years, mixed 191.8

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