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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:110.7 nTPM
FANTOM5:184.9 Scaled Tags Per Million
Pig:107.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042122Antibody HPA042770
Glial cells LowNot detected
Neuronal cells HighNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 110.7
Samples: 246

Max nTPM: 198.9
Min nTPM: 39.8
Std nTPM: 29.5
Median nTPM: 109.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 198.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 182.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 182.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 174.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 174.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 173.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 173.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 173.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 172.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 170.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 170.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 167.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 165.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 164.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 164.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 160.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 160.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 158.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 157.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 157.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 156.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 156.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 155.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 153.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 153.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 151.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 150.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 148.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 148.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 147.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 147.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 147.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 144.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 144.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 143.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 143.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 143.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 140.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 140.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 139.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 139.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 138.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 138.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 137.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 137.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 135.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 135.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 135.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 133.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 132.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 132.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 131.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 131.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 131.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 130.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 129.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 129.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 128.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 128.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 127.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 127.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 127.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 127.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 127.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 126.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 126.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 126.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 125.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 125.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 125.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 125.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 125.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 124.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 123.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 122.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 122.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 121.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 121.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 121.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 120.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 119.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 119.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 119.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 118.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 118.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 118.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 117.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 116.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 116.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 116.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 115.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 114.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 114.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 114.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 114.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 113.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 113.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 112.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 112.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 112.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 111.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 111.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 111.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 111.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 111.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 111.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 110.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 110.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 110.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 110.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 110.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 109.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 109.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 109.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 108.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 108.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 108.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 107.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 106.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 106.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 106.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 106.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 106.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 105.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 105.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 105.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 104.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 104.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 104.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 103.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 103.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 103.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 103.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 103.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 103.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 102.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 101.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 101.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 101.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 100.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 99.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 99.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 99.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 99.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 98.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 98.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 98.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 98.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 96.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 96.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 95.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 95.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 95.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 95.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 94.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 94.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 94.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 93.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 93.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 93.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 93.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 91.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 90.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 90.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 89.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 89.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 89.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 89.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 89.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 89.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 88.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 88.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 88.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 87.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 87.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 87.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 86.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 86.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 84.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 84.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 84.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 81.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 81.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 81.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 81.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 80.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 80.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 80.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 79.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 78.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 78.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 77.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 77.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 76.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 75.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 75.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 75.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 75.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 74.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 74.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 74.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 73.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 73.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 72.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 72.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 71.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 70.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 70.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 70.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 69.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 67.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 67.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 64.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 62.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 60.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 60.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 59.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 58.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 57.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 55.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 53.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 49.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 39.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 184.9
FF:10164-103B2 76 years, female 184.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.2
Pig sample Sample description nTPM
Caudate
nTPM: 107.2
Samples: 4

Max nTPM: 129.8
Min nTPM: 88.7
Sample A Female 88.7
Sample B Female 104.3
Sample C Male 129.8
Sample D Male 106.1

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