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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.3 nTPM
HPA Brain:181.8 nTPM
GTEx:125.3 nTPM
FANTOM5:90.4 Scaled Tags Per Million
Pig:76.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.2
2565 Male, age 75, midline 175.3
2194 Female, age 79, both hemispheres 132.8
2816 Male, age 47, midline 129.1
1981 Female, age 72, midline 109.2
2048 Male, age 55, midline 94.5
Cervical spinal cord, dorsal horn
nTPM: 126.2
2296 Male, age 66, both hemispheres 168.6
2173 Female, age 72, unknown 129.1
1877 Male, age 55, unknown 119.9
2297 Male, age 75, both hemispheres 115.9
2069 Male, age 47, both hemispheres 113.8
2721 Male, age 90, both hemispheres 109.8
Cervical spinal cord, ventral horn
nTPM: 181.8
2480 Male, age 75, both hemispheres 327.4
2295 Male, age 66, both hemispheres 185.3
2809 Male, age 90, both hemispheres 170.9
2820 Female, age 79, both hemispheres 168.8
2068 Male, age 55, unknown 148.5
2098 Female, age 72, unknown 90.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 125.3
Samples: 159

Max nTPM: 307.3
Min nTPM: 32.5
Std nTPM: 46.9
Median nTPM: 117.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 307.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 259.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 248.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 244.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 228.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 219.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 213.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 210.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 209.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 201.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 194.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 192.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 191.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 191.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 191.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 188.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 187.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 185.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 184.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 179.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 177.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 177.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 176.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 176.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 175.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 172.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 171.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 169.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 164.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 160.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 158.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 157.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 157.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 157.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 157.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 156.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 156.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 155.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 153.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 151.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 150.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 150.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 148.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 148.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 146.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 146.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 145.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 145.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 143.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 143.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 140.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 139.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 138.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 137.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 136.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 135.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 134.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 131.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 131.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 130.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 129.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 129.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 128.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 124.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 124.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 124.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 119.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 118.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 117.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 117.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 117.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 116.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 115.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 115.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 114.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 113.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 112.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 112.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 112.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 111.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 111.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 110.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 109.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 108.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 106.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 106.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 105.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 104.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 104.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 103.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 102.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 101.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 101.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 100.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 98.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 97.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 95.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 95.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 95.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 95.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 94.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 93.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 93.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 92.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 92.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 91.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 90.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 89.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 89.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 89.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 88.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 88.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 88.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 86.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 86.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 82.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 81.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 80.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 79.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 78.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 78.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 78.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 74.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 73.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 72.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 72.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 71.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 69.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 62.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 59.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 53.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 52.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 45.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 90.4
FF:10181-103D1 60 years, female 131.8
FF:10159-103A6 76 years, female 48.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.8
Samples: 4

Max nTPM: 82.2
Min nTPM: 44.5
Sample A Female 82.2
Sample B Female 63.1
Sample C Male 44.5
Sample D Male 81.2
Ventral spinal cord
nTPM: 76.0
Samples: 4

Max nTPM: 87.3
Min nTPM: 62.4
Sample A Female 82.4
Sample B Female 71.8
Sample C Male 62.4
Sample D Male 87.3

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