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SLC24A1
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  • SLC24A1
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Low
Limiting membrane: Not detected
Nerve fiber layer: Low
Outer plexiform layer: Low
Photoreceptor cells: Medium
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:187.5 nTPM
GTEx:187.5 nTPM
FANTOM5:155.0 Scaled Tags Per Million
Pig:174.5 nTPM
Mouse:621.7 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA039370
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Low
Ganglion cells Not detected
Nerve fiber layer Low

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 187.5
Samples: 105

Max nTPM: 311.0
Min nTPM: 57.7
Std nTPM: 52.1
Median nTPM:
415_1 77 years, female 311.0
352_1 62 years, male 290.4
386_1 76 years, male 280.2
466_1 57 years, female 272.5
229_1 69 years, female 272.4
172_1 72 years, female 268.6
9_1 66 years, female 268.3
162_1 79 years, female 260.6
6_1 73 years, female 260.4
126_1 63 years, male 256.1
414_1 84 years, female 254.1
32_1 67 years, male 248.2
246_1 77 years, male 248.0
251_1 78 years, male 245.0
324_1 76 years, male 244.9
468_1 89 years, male 240.6
490_1 67 years, female 240.4
149_1 88 years, male 238.6
425_1 59 years, female 238.1
43_1 64 years, female 236.8
265_1 87 years, male 235.9
142_1 61 years, female 235.1
286_1 68 years, female 231.2
526_1 61 years, male 230.1
115_1 83 years, male 228.4
389_1 86 years, female 228.3
480_1 63 years, male 228.3
81_1 67 years, male 226.0
316_1 62 years, male 223.9
292_1 71 years, male 223.5
217_1 76 years, male 221.1
153_1 70 years, female 216.3
177_1 74 years, male 216.3
413_1 59 years, female 214.2
354_1 81 years, female 213.6
376_1 75 years, female 213.6
189_1 76 years, male 209.9
355_1 70 years, female 208.7
499_1 55 years, female 206.1
396_1 62 years, male 205.4
377_1 82 years, female 204.9
375_1 74 years, female 203.7
266_1 85 years, male 201.8
243_1 75 years, male 201.3
315_1 62 years, female 200.0
405_1 91 years, male 199.4
394_1 75 years, female 197.6
319_1 81 years, male 196.8
503_1 68 years, male 194.8
447_1 81 years, male 194.3
163_1 78 years, male 192.8
18_1 88 years, male 192.7
117_1 61 years, male 189.8
349_1 83 years, male 189.0
404_1 82 years, female 187.7
35_1 74 years, female 184.7
491_1 89 years, female 184.3
335_1 73 years, female 182.8
518_1 75 years, female 182.1
379_1 60 years, male 181.7
254_1 77 years, female 180.8
313_1 79 years, female 177.9
348_1 84 years, male 177.6
237_1 82 years, male 176.6
350_1 84 years, female 175.4
356_1 87 years, female 174.5
321_1 62 years, female 172.0
406_1 79 years, male 170.8
517_1 88 years, male 169.8
353_1 82 years, female 166.5
291_1 76 years, male 162.9
347_1 72 years, male 162.8
384_1 83 years, male 162.2
17_1 71 years, male 157.3
89_1 63 years, male 156.2
320_1 89 years, female 155.5
264_1 73 years, female 154.8
318_1 68 years, male 153.6
288_1 66 years, female 149.9
307_1 66 years, female 149.2
99_1 64 years, male 146.4
293_1 68 years, female 146.1
2_1 77 years, female 144.8
109_1 81 years, female 141.6
137_1 83 years, male 139.2
120_1 70 years, female 137.9
145_1 84 years, male 137.7
311_1 78 years, male 136.6
139_1 64 years, female 132.4
218_1 71 years, female 126.5
4_1 88 years, female 126.1
351_1 91 years, male 123.7
501_1 88 years, male 122.9
42_1 85 years, male 119.9
322_1 76 years, male 118.7
119_1 70 years, female 114.6
314_1 67 years, male 111.7
173_1 67 years, male 107.3
317_1 60 years, male 99.8
295_1 61 years, female 96.3
506_1 65 years, male 94.7
495_1 57 years, female 91.4
452_1 88 years, female 84.5
308_1 70 years, female 66.0
41_1 94 years, female 57.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

155.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 155.0
FF:10030-101E3 24-65 years, mixed 155.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.5
Pig sample Sample description nTPM
Retina
nTPM: 174.5
Samples: 4

Max nTPM: 204.3
Min nTPM: 156.8
Sample A Female 172.8
Sample B Female 163.9
Sample C Male 204.3
Sample D Male 156.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

621.7
Mouse sample Sample description nTPM
Retina
nTPM: 621.8
Samples: 4

Max nTPM: 673.5
Min nTPM: 557.4
Sample A Male 612.4
Sample B Male 643.7
Sample C Female 557.4
Sample D Female 673.5

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