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HACD3
HPA
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  • HACD3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HACD3
Synonyms B-ind1, HSPC121, PTPLAD1
Gene descriptioni

Full gene name according to HGNC.

3-hydroxyacyl-CoA dehydratase 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q22.31
Chromosome location (bp) 65530418 - 65578349
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000074696 (version 109)
Entrez gene 51495
HGNC HGNC:24175
UniProt Q9P035 (UniProt - Evidence at protein level)
neXtProt NX_Q9P035
GeneCards HACD3
Antibodypedia HACD3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. May be involved in Rac1-signaling pathways leading to the modulation of gene expression. Promotes insulin receptor/INSR autophosphorylation and is involved in INSR internalization 1.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Lyase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Fatty acid biosynthesis, Fatty acid metabolism, Lipid biosynthesis, Lipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables 3-hydroxyacyl-CoA dehydratase activity and enzyme binding activity. Involved in fatty acid biosynthetic process; positive regulation by virus of viral protein levels in host cell; and positive regulation of viral genome replication. Located in endoplasmic reticulum and nuclear membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HACD3-201
ENSP00000261875
ENST00000261875
Q9P035
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3
Show all
Enzymes
   ENZYME proteins
   Lyases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005925 [focal adhesion]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0007249 [I-kappaB kinase/NF-kappaB signaling]
GO:0007254 [JNK cascade]
GO:0007264 [small GTPase mediated signal transduction]
GO:0007266 [Rho protein signal transduction]
GO:0016020 [membrane]
GO:0016601 [Rac protein signal transduction]
GO:0016829 [lyase activity]
GO:0018812 [3-hydroxyacyl-CoA dehydratase activity]
GO:0019899 [enzyme binding]
GO:0030148 [sphingolipid biosynthetic process]
GO:0030497 [fatty acid elongation]
GO:0031965 [nuclear membrane]
GO:0042761 [very long-chain fatty acid biosynthetic process]
GO:0045070 [positive regulation of viral genome replication]
GO:0046726 [positive regulation by virus of viral protein levels in host cell]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
362 aa
43.2 kDa
No 6
HACD3-202
ENSP00000392491
ENST00000442729
Q9P035
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3
Show all
Enzymes
   ENZYME proteins
   Lyases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005925 [focal adhesion]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0007249 [I-kappaB kinase/NF-kappaB signaling]
GO:0007264 [small GTPase mediated signal transduction]
GO:0016020 [membrane]
GO:0016601 [Rac protein signal transduction]
GO:0016829 [lyase activity]
GO:0018812 [3-hydroxyacyl-CoA dehydratase activity]
GO:0019899 [enzyme binding]
GO:0030148 [sphingolipid biosynthetic process]
GO:0030497 [fatty acid elongation]
GO:0031965 [nuclear membrane]
GO:0042761 [very long-chain fatty acid biosynthetic process]
GO:0045070 [positive regulation of viral genome replication]
GO:0046726 [positive regulation by virus of viral protein levels in host cell]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
307 aa
36.4 kDa
No 6
HACD3-204
ENSP00000454610
ENST00000562832
H3BMZ1
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
139 aa
16.2 kDa
No 5
HACD3-205
ENSP00000455686
ENST00000562901
H3BRL8
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
245 aa
29.2 kDa
No 6
HACD3-206
ENSP00000456568
ENST00000565299
H3BS72
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
400 aa
47.1 kDa
No 6
HACD3-207
ENSP00000456300
ENST00000566074
H3BRL8
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
245 aa
29.2 kDa
No 6
HACD3-209
ENSP00000455587
ENST00000566511
H3BRL8
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
245 aa
29.2 kDa
No 6
HACD3-210
ENSP00000455530
ENST00000568793
H3BPZ1
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
337 aa
40.1 kDa
No 6
HACD3-211
ENSP00000454873
ENST00000569894
H3BRL8
[Direct mapping] Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0016020 [membrane]
GO:0016829 [lyase activity]
GO:0031965 [nuclear membrane]
GO:0102158 [very-long-chain 3-hydroxyacyl-CoA dehydratase activity]
GO:0102343 [3-hydroxy-arachidoyl-CoA dehydratase activity]
GO:0102344 [3-hydroxy-behenoyl-CoA dehydratase activity]
GO:0102345 [3-hydroxy-lignoceroyl-CoA dehydratase activity]
Show all
245 aa
29.2 kDa
No 6

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