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ACTR6
HPA
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  • ACTR6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ACTR6
Synonyms ARP6, FLJ13433
Gene descriptioni

Full gene name according to HGNC.

Actin related protein 6
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q23.1
Chromosome location (bp) 100199122 - 100241865
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000075089 (version 109)
Entrez gene 64431
HGNC HGNC:24025
UniProt Q9GZN1 (UniProt - Evidence at protein level)
neXtProt NX_Q9GZN1
GeneCards ACTR6
Antibodypedia ACTR6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Required for formation and/or maintenance of proper nucleolar structure and function 1. Plays a dual role in the regulation of ribosomal DNA (rDNA) transcription (By similarity). In the presence of high glucose, maintains active rDNA transcription through H2A.Z deposition and under glucose starvation, is required for the repression of rDNA transcription, and this function may be independent of H2A.Z (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Activator, Repressor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable nucleosome binding activity. Predicted to be involved in histone exchange. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ACTR6-201
ENSP00000188312
ENST00000188312
Q9GZN1
[Direct mapping] Actin-related protein 6
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000786 [nucleosome]
GO:0000812 [Swr1 complex]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of DNA-templated transcription]
GO:0007000 [nucleolus organization]
GO:0016479 [negative regulation of transcription by RNA polymerase I]
GO:0031491 [nucleosome binding]
GO:0043229 [intracellular organelle]
GO:0045943 [positive regulation of transcription by RNA polymerase I]
Show all
396 aa
45.8 kDa
No 0
ACTR6-202
ENSP00000448669
ENST00000546902
G3V1Y1
[Direct mapping] ARP6 actin-related protein 6 homolog (Yeast), isoform CRA_d; Actin-related protein 6
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0006338 [chromatin remodeling]
GO:0043229 [intracellular organelle]
Show all
314 aa
36.3 kDa
No 0
ACTR6-209
ENSP00000448356
ENST00000551617
F8VSD1
[Direct mapping] Actin-related protein 6
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0006338 [chromatin remodeling]
GO:0043229 [intracellular organelle]
Show all
294 aa
34.1 kDa
No 0
ACTR6-210
ENSP00000448508
ENST00000551652
F8VRL1
[Direct mapping] Actin-related protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0006338 [chromatin remodeling]
GO:0043229 [intracellular organelle]
Show all
192 aa
22.1 kDa
No 0
ACTR6-212
ENSP00000447237
ENST00000552376
F8W057
[Direct mapping] Actin-related protein 6
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0006338 [chromatin remodeling]
GO:0043229 [intracellular organelle]
Show all
376 aa
43.6 kDa
No 0

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