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TIPIN
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TIPIN
Synonyms FLJ20516
Gene descriptioni

Full gene name according to HGNC.

TIMELESS interacting protein
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q22.31
Chromosome location (bp) 66336191 - 66386746
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000075131 (version 109)
Entrez gene 54962
HGNC HGNC:30750
UniProt Q9BVW5 (UniProt - Evidence at protein level)
neXtProt NX_Q9BVW5
GeneCards TIPIN
Antibodypedia TIPIN antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays an important role in the control of DNA replication and the maintenance of replication fork stability 1, 2, 3. Important for cell survival after DNA damage or replication stress 4. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light 5. Forms a complex with TIMELESS and this complex regulates DNA replication processes under both normal and stress conditions, stabilizes replication forks and influences both CHEK1 phosphorylation and the intra-S phase checkpoint in response to genotoxic stress 6, 7, 8, 9, 10.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, Cell division, DNA damage, Mitosis
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is part of the replisome complex, a group of proteins that support DNA replication. It binds TIM, which is involved in circadian rhythm regulation, and aids in protecting cells against DNA damage and stress. Two pseudogenes and two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TIPIN-201
ENSP00000261881
ENST00000261881
Q9BVW5
[Direct mapping] TIMELESS-interacting protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0000077 [DNA damage checkpoint signaling]
GO:0000785 [chromatin]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007049 [cell cycle]
GO:0008284 [positive regulation of cell population proliferation]
GO:0009411 [response to UV]
GO:0031298 [replication fork protection complex]
GO:0031573 [mitotic intra-S DNA damage checkpoint signaling]
GO:0033262 [regulation of nuclear cell cycle DNA replication]
GO:0043111 [replication fork arrest]
GO:0044770 [cell cycle phase transition]
GO:0048478 [replication fork protection]
GO:0051301 [cell division]
Show all
301 aa
34.6 kDa
No 0
TIPIN-203
ENSP00000457406
ENST00000562124
H3BU04
[Direct mapping] TIMELESS-interacting protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0005634 [nucleus]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007049 [cell cycle]
GO:0048478 [replication fork protection]
Show all
294 aa
33.7 kDa
No 0
TIPIN-205
ENSP00000457172
ENST00000568216
H3BTH1
[Direct mapping] TIMELESS-interacting protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0005634 [nucleus]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007049 [cell cycle]
GO:0048478 [replication fork protection]
Show all
141 aa
16.2 kDa
No 0
TIPIN-206
ENSP00000458117
ENST00000570251
H3BVG9
[Direct mapping] TIMELESS-interacting protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0005634 [nucleus]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007049 [cell cycle]
GO:0048478 [replication fork protection]
Show all
116 aa
13.2 kDa
No 0

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