HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:161.3 nTPM
HPA Brain:188.6 nTPM
GTEx:161.3 nTPM
FANTOM5:198.3 Scaled Tags Per Million
Pig:194.8 nTPM
Mouse:295.5 nTPM
Allen mouse:16.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 188.6
Sample id Sample description nTPM
Hippocampus
nTPM: 160.4
1898 Male, age 80, left hemisphere 220.3
2148 Female, age 91, left hemisphere 157.5
2529 Female, age 94, left hemisphere 155.2
2621 Female, age 67, right hemisphere 151.1
1855 Male, age 76, left hemisphere 140.4
1911 Female, age 85, right hemisphere 137.6
Dentate gyrus
nTPM: 165.7
1927 Female, age 91, both hemispheres 196.9
2010 Male, age 76, both hemispheres 185.5
2530 Female, age 94, left hemisphere 169.1
2528 Male, age 74, both hemispheres 160.9
2531 Female, age 67, both hemispheres 143.2
2246 Female, age 85, both hemispheres 138.4
Entorhinal gyrus
nTPM: 156.6
2764 Male, age 80, right hemisphere 192.1
1787 Male, age 76, left hemisphere 160.5
1938 Female, age 85, left hemisphere 157.7
2686 Male, age 75, right hemisphere 156.6
2117 Female, age 91, right hemisphere 149.6
2613 Female, age 94, left hemisphere 123.3
Hippocampus, CA1
nTPM: 188.6
2749 Male, age 80, left hemisphere 286.4
2045 Male, age 76, both hemispheres 168.6
1873 Female, age 85, both hemispheres 167.5
2527 Male, age 74, both hemispheres 166.5
2082 Female, age 91, right hemisphere 154.2
Hippocampus, CA2
nTPM: 178.5
1963 Male, age 80, left hemisphere 226.3
1892 Male, age 76, both hemispheres 211.1
2249 Male, age 74, both hemispheres 192.6
2437 Female, age 94, left hemisphere 149.1
2113 Female, age 91, right hemisphere 146.7
1940 Female, age 85, left hemisphere 145.0
Hippocampus, CA3
nTPM: 184.2
2436 Male, age 74, both hemispheres 247.9
2137 Male, age 80, left hemisphere 225.9
1867 Male, age 76, both hemispheres 212.1
2861 Female, age 67, both hemispheres 142.8
1891 Female, age 85, both hemispheres 142.0
2620 Female, age 94, left hemisphere 134.3
Parahippocampal cortex
nTPM: 149.3
1850 Male, age 80, both hemispheres 187.0
1990 Female, age 91, right hemisphere 172.0
1933 Female, age 85, both hemispheres 158.5
2245 Female, age 91, both hemispheres 158.4
2250 Female, age 67, right hemisphere 150.1
2532 Female, age 72, left hemisphere 148.0
2018 Male, age 76, both hemispheres 146.9
2622 Female, age 67, right hemisphere 127.5
2693 Female, age 94, both hemispheres 126.6
2692 Male, age 74, both hemispheres 117.6
Perirhinal gyrus
nTPM: 178.9
1794 Male, age 80, right hemisphere 216.8
1847 Female, age 91, left hemisphere 207.5
1841 Female, age 85, right hemisphere 174.4
2521 Female, age 94, right hemisphere 152.8
2848 Male, age 76, right hemisphere 142.9
Subiculum
nTPM: 144.6
1977 Female, age 85, both hemispheres 177.2
1901 Male, age 80, both hemispheres 171.9
2042 Male, age 76, both hemispheres 138.2
2729 Female, age 91, right hemisphere 135.3
2619 Male, age 74, both hemispheres 128.9
2438 Female, age 94, left hemisphere 116.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 161.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 161.3
Samples: 197

Max nTPM: 272.6
Min nTPM: 94.6
Std nTPM: 34.0
Median nTPM: 156.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 272.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 268.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 241.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 232.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 230.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 229.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 228.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 227.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 222.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 221.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 219.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 198.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 198.3
FF:10169-103B7 60 years, female 260.6
FF:10153-102I9 76 years, female 135.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 194.8
Pig sample Sample description nTPM
Subiculum
nTPM: 163.1
Samples: 4

Max nTPM: 220.6
Min nTPM: 132.2
Sample A Female 220.6
Sample B Female 159.5
Sample C Male 140.0
Sample D Male 132.2
Dorsal hippocampus
nTPM: 194.8
Samples: 4

Max nTPM: 246.7
Min nTPM: 141.0
Sample A Female 246.7
Sample B Female 198.1
Sample C Male 193.4
Sample D Male 141.0
Entorhinal cortex
nTPM: 179.5
Samples: 4

Max nTPM: 244.5
Min nTPM: 132.8
Sample A Female 165.0
Sample B Female 244.5
Sample C Male 175.7
Sample D Male 132.8
Ventral hippocampus
nTPM: 178.8
Samples: 4

Max nTPM: 219.5
Min nTPM: 143.6
Sample A Female 191.5
Sample B Female 143.6
Sample C Male 219.5
Sample D Male 160.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 295.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 270.8
Samples: 4

Max nTPM: 277.6
Min nTPM: 263.5
Sample A Male 263.5
Sample B Male 265.2
Sample C Female 277.6
Sample D Female 276.8
Hippocampal formation
nTPM: 295.5
Samples: 4

Max nTPM: 322.9
Min nTPM: 270.2
Sample A Male 322.9
Sample B Male 270.2
Sample C Female 297.7
Sample D Female 291.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.4
972 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 16.4
975 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 15.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org