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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:181.4 nTPM
GTEx:181.4 nTPM
FANTOM5:77.8 Scaled Tags Per Million
Pig:85.9 nTPM
Mouse:294.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 181.4
Samples: 105

Max nTPM: 325.5
Min nTPM: 67.7
Std nTPM: 57.9
Median nTPM:
142_1 61 years, female 325.5
162_1 79 years, female 318.4
415_1 77 years, female 310.2
491_1 89 years, female 308.5
32_1 67 years, male 303.4
2_1 77 years, female 283.9
149_1 88 years, male 281.3
266_1 85 years, male 279.8
109_1 81 years, female 273.4
6_1 73 years, female 268.9
117_1 61 years, male 264.7
17_1 71 years, male 263.7
43_1 64 years, female 258.0
81_1 67 years, male 255.7
126_1 63 years, male 254.4
18_1 88 years, male 250.4
120_1 70 years, female 249.8
139_1 64 years, female 246.7
89_1 63 years, male 238.5
315_1 62 years, female 236.3
115_1 83 years, male 235.7
490_1 67 years, female 234.1
153_1 70 years, female 231.5
9_1 66 years, female 229.5
495_1 57 years, female 229.3
468_1 89 years, male 225.0
466_1 57 years, female 219.4
35_1 74 years, female 218.7
217_1 76 years, male 215.6
324_1 76 years, male 214.2
119_1 70 years, female 213.9
4_1 88 years, female 211.5
322_1 76 years, male 211.3
99_1 64 years, male 203.6
137_1 83 years, male 203.5
348_1 84 years, male 193.9
447_1 81 years, male 192.3
265_1 87 years, male 191.0
499_1 55 years, female 189.1
307_1 66 years, female 188.5
311_1 78 years, male 187.4
503_1 68 years, male 185.8
526_1 61 years, male 185.4
335_1 73 years, female 185.2
313_1 79 years, female 181.5
145_1 84 years, male 181.4
288_1 66 years, female 179.2
254_1 77 years, female 179.0
42_1 85 years, male 176.5
518_1 75 years, female 176.5
229_1 69 years, female 175.4
251_1 78 years, male 173.8
414_1 84 years, female 172.1
314_1 67 years, male 170.4
286_1 68 years, female 170.0
308_1 70 years, female 166.6
352_1 62 years, male 165.8
246_1 77 years, male 164.2
501_1 88 years, male 163.7
413_1 59 years, female 162.6
292_1 71 years, male 159.4
517_1 88 years, male 159.0
480_1 63 years, male 157.5
350_1 84 years, female 154.1
316_1 62 years, male 150.8
386_1 76 years, male 150.6
377_1 82 years, female 149.4
293_1 68 years, female 148.7
243_1 75 years, male 148.4
425_1 59 years, female 145.7
317_1 60 years, male 145.3
389_1 86 years, female 144.5
351_1 91 years, male 143.7
396_1 62 years, male 143.0
405_1 91 years, male 142.2
355_1 70 years, female 141.1
291_1 76 years, male 140.4
320_1 89 years, female 140.2
404_1 82 years, female 138.7
41_1 94 years, female 138.2
375_1 74 years, female 133.9
173_1 67 years, male 132.9
319_1 81 years, male 132.4
356_1 87 years, female 132.0
354_1 81 years, female 131.3
318_1 68 years, male 130.8
349_1 83 years, male 130.7
295_1 61 years, female 130.4
347_1 72 years, male 128.6
406_1 79 years, male 127.5
189_1 76 years, male 124.5
264_1 73 years, female 123.4
506_1 65 years, male 119.4
321_1 62 years, female 117.5
353_1 82 years, female 117.0
172_1 72 years, female 115.2
376_1 75 years, female 112.8
237_1 82 years, male 111.4
394_1 75 years, female 106.7
379_1 60 years, male 106.3
384_1 83 years, male 94.8
452_1 88 years, female 94.0
177_1 74 years, male 87.4
163_1 78 years, male 69.7
218_1 71 years, female 67.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 77.8
FF:10030-101E3 24-65 years, mixed 77.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.9
Pig sample Sample description nTPM
Retina
nTPM: 85.9
Samples: 4

Max nTPM: 90.2
Min nTPM: 79.3
Sample A Female 79.3
Sample B Female 86.8
Sample C Male 90.2
Sample D Male 87.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.1
Mouse sample Sample description nTPM
Retina
nTPM: 294.1
Samples: 4

Max nTPM: 310.1
Min nTPM: 283.2
Sample A Male 289.4
Sample B Male 283.2
Sample C Female 293.8
Sample D Female 310.1

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