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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:13.1 nTPM
HPA Brain:47.8 nTPM
GTEx:13.1 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:24.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 27.5
2194 Female, age 79, both hemispheres 36.7
1981 Female, age 72, midline 31.0
2048 Male, age 55, midline 23.9
2816 Male, age 47, midline 23.2
2565 Male, age 75, midline 22.7
Cervical spinal cord, dorsal horn
nTPM: 47.8
2721 Male, age 90, both hemispheres 80.9
2297 Male, age 75, both hemispheres 71.8
2069 Male, age 47, both hemispheres 49.4
1877 Male, age 55, unknown 45.4
2173 Female, age 72, unknown 24.2
2296 Male, age 66, both hemispheres 15.3
Cervical spinal cord, ventral horn
nTPM: 25.6
2068 Male, age 55, unknown 37.5
2820 Female, age 79, both hemispheres 34.3
2480 Male, age 75, both hemispheres 27.6
2295 Male, age 66, both hemispheres 23.9
2809 Male, age 90, both hemispheres 17.4
2098 Female, age 72, unknown 12.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 13.1
Samples: 159

Max nTPM: 49.9
Min nTPM: 2.8
Std nTPM: 8.3
Median nTPM: 10.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 49.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 39.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 38.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 36.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 35.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 35.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 32.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 32.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 31.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 28.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 26.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 25.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 24.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 24.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 23.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 23.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 23.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 22.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 21.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 21.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 20.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 20.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 20.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 20.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 19.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 19.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 19.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 19.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 18.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 18.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 17.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 17.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 17.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 17.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 17.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 17.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 16.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 16.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 16.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 15.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 15.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 14.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 14.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 14.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 14.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 14.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 13.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 13.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 13.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 13.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 13.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 13.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 13.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 13.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 12.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 12.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 12.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 12.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 12.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 12.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 12.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 11.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 11.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 11.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 11.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 11.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 11.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 11.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 11.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 11.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 11.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 11.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 11.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 10.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 10.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 10.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 10.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 10.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 9.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 9.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 9.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 9.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 9.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 9.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 9.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 9.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 9.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 9.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 9.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 9.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 9.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 8.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 8.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 8.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 8.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 8.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 8.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 8.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 8.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 8.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 8.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 8.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 7.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 7.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 7.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 7.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 7.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 7.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 7.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 7.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 7.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 6.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 6.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 6.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 6.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 6.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 6.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 6.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 6.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 6.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 6.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 6.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 6.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 6.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 5.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 5.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 5.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 5.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 5.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 4.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 4.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 3.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 27.4
FF:10181-103D1 60 years, female 37.8
FF:10159-103A6 76 years, female 17.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 24.1
Samples: 4

Max nTPM: 35.6
Min nTPM: 15.3
Sample A Female 35.6
Sample B Female 16.9
Sample C Male 15.3
Sample D Male 28.7
Ventral spinal cord
nTPM: 19.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 15.9
Sample A Female 22.4
Sample B Female 17.8
Sample C Male 21.5
Sample D Male 15.9

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