MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:26.5 nTPM
GTEx:20.5 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:20.6 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.0
2411 Female, age 72, unknown 29.3
1870 Female, age 42, unknown 27.8
2019 Male, age 18, unknown 26.4
1833 Male, age 53, unknown 25.4
2828 Female, age 72, unknown 24.8
1830 Male, age 51, unknown 24.7
1827 Male, age 72, unknown 24.6
2219 Male, age 76, both hemispheres 23.5
2586 Male, age 75, left hemisphere 22.8
2666 Male, age 74, left hemisphere 21.0
Dorsal raphe nucleus
nTPM: 25.4
2298 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 28.6
1828 Male, age 53, unknown 23.4
2047 Male, age 72, unknown 22.8
2016 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 22.7
2097 Female, age 72, unknown 24.4
1848 Female, age 42, unknown 22.5
1890 Male, age 53, unknown 22.2
2849 Male, age 72, unknown 21.9
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Periaquaductal grey, anterior
nTPM: 26.3
2502 Female, age 75, unknown 27.3
1947 Male, age 18, unknown 26.7
1795 Male, age 51, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 21.7
2850 Male, age 76, both hemispheres 22.8
2464 Female, age 72, unknown 22.7
1840 Male, age 53, unknown 21.5
1831 Male, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 24.7
2272 Male, age 74, both hemispheres 27.4
2140 Male, age 76, both hemispheres 25.4
2053 Male, age 18, unknown 21.2
Pretectal area
nTPM: 24.7
2273 Male, age 74, both hemispheres 26.7
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 26.6
2007 Male, age 72, unknown 26.2
2667 Female, age 75, unknown 25.7
1815 Male, age 53, unknown 24.4
1817 Female, age 42, unknown 24.4
1816 Male, age 51, unknown 23.1
2407 Male, age 75, both hemispheres 22.7
2825 Male, age 18, unknown 22.7
1944 Female, age 72, unknown 22.3
Red nucleus
nTPM: 26.1
2227 Male, age 72, unknown 28.9
2503 Female, age 72, unknown 27.9
1904 Male, age 53, unknown 27.6
2785 Male, age 18, unknown 27.5
2769 Male, age 72, unknown 27.3
1865 Male, age 51, unknown 26.8
1821 Female, age 72, unknown 26.1
1954 Female, age 42, unknown 25.3
2725 Female, age 75, unknown 25.1
2588 Male, age 74, left hemisphere 24.5
2823 Male, age 76, right hemisphere 24.2
2584 Male, age 75, left hemisphere 21.6
Substantia nigra
nTPM: 23.2
1851 Male, age 51, unknown 26.8
1916 Female, age 42, unknown 25.3
2590 Female, age 75, unknown 24.5
1889 Female, age 72, unknown 23.6
2409 Female, age 72, unknown 23.4
2699 Male, age 18, unknown 23.3
1941 Male, age 53, unknown 22.0
2665 Male, age 74, both hemispheres 22.0
2241 Male, age 72, unknown 20.9
2583 Male, age 75, right hemisphere 20.6
Superior colliculus
nTPM: 24.3
1796 Male, age 53, unknown 27.9
1913 Female, age 42, unknown 27.6
1995 Male, age 72, unknown 27.1
2261 Male, age 18, unknown 26.6
1839 Male, age 51, unknown 24.0
2587 Male, age 74, left hemisphere 23.6
2087 Female, age 72, unknown 23.2
2668 Female, age 75, unknown 21.9
1895 Male, age 76, right hemisphere 21.7
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 25.1
2410 Female, age 72, unknown 28.0
2223 Female, age 72, unknown 26.4
2218 Male, age 76, both hemispheres 24.7
1942 Male, age 51, unknown 23.9
2021 Male, age 53, unknown 23.8
1915 Female, age 42, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 37.9
Min nTPM: 12.7
Std nTPM: 4.2
Median nTPM: 20.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 26.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.0
Sample A Female 18.3
Sample B Female 15.0
Sample C Male 16.3
Sample D Male 18.0
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.5
Sample A Female 23.2
Sample B Female 15.7
Sample C Male 15.5
Sample D Male 16.7
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.0
Min nTPM: 13.4
Sample B Female 15.2
Sample C Male 16.0
Sample D Male 13.4
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 15.7
Sample A Female 20.5
Sample B Female 17.5
Sample C Male 15.7
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 19.6
Sample A Male 22.3
Sample B Male 20.0
Sample C Female 19.6
Sample D Female 20.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69080055 Antisense, RP_050324_01_G06, Mouse strain C57BL/6J (56 days, male) 4.3

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