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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.5 nTPM
HPA Brain:103.5 nTPM
GTEx:151.5 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:85.1 nTPM
Mouse:250.0 nTPM
Allen mouse:15.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.5
Sample id Sample description nTPM
Amygdala
nTPM: 103.5
2814 Male, age 76, right hemisphere 124.2
2514 Male, age 75, right hemisphere 107.2
1987 Female, age 91, left hemisphere 104.0
2695 Female, age 67, right hemisphere 96.7
2517 Female, age 94, left hemisphere 85.6
Basal amygdala
nTPM: 93.4
2609 Male, age 75, right hemisphere 101.1
2243 Female, age 91, right hemisphere 100.0
2110 Male, age 80, left hemisphere 99.4
1955 Male, age 76, both hemispheres 96.3
2685 Female, age 94, left hemisphere 95.7
2827 Female, age 67, right hemisphere 67.9
Central amygdala
nTPM: 91.9
1905 Male, age 76, both hemispheres 112.0
2239 Male, age 80, left hemisphere 92.5
2515 Male, age 75, right hemisphere 88.6
2701 Female, age 91, right hemisphere 85.1
2826 Female, age 94, left hemisphere 81.3
Corticomedial amygdala
nTPM: 95.1
2829 Male, age 80, left hemisphere 109.5
2428 Male, age 75, right hemisphere 101.2
2242 Female, age 91, right hemisphere 100.6
2429 Female, age 94, left hemisphere 93.6
2240 Male, age 76, both hemispheres 90.7
2535 Female, age 67, right hemisphere 75.1
Lateral amygdala
nTPM: 84.9
1883 Male, age 76, both hemispheres 109.2
2516 Male, age 75, right hemisphere 88.7
2534 Female, age 94, left hemisphere 86.5
2256 Male, age 80, left hemisphere 77.7
2255 Female, age 91, right hemisphere 77.6
2830 Female, age 67, right hemisphere 69.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.5
Samples: 152

Max nTPM: 255.7
Min nTPM: 85.9
Std nTPM: 29.2
Median nTPM: 148.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 255.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 233.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 224.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 220.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 212.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 212.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 209.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 206.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 201.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 191.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 188.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 188.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 187.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 186.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 184.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 184.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 184.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 184.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 182.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 182.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 182.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 180.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 179.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 178.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 178.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 178.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 175.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 174.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 173.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 171.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 169.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 166.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 165.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 165.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 164.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 163.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 163.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 162.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 162.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 162.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 161.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 160.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 159.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 159.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 158.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 157.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 157.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 156.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 156.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 155.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 155.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 154.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 154.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 152.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 151.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 151.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 149.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 149.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 149.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 147.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 145.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 145.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 145.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 145.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 145.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 144.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 143.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 143.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 143.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 141.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 141.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 140.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 140.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 140.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 140.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 139.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 139.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 139.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 138.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 137.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 137.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 136.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 135.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 133.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 133.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 133.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 132.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 130.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 129.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 128.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 128.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 126.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 126.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 125.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 121.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 120.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 119.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 119.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 118.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 117.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 116.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 114.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 113.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 111.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 108.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 103.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 101.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 93.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 85.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.4
FF:10151-102I7 76 years, female 105.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.1
Pig sample Sample description nTPM
Amygdala
nTPM: 85.1
Samples: 4

Max nTPM: 116.4
Min nTPM: 73.9
Sample A Female 116.4
Sample B Female 74.8
Sample C Male 73.9
Sample D Male 75.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 250.0
Samples: 4

Max nTPM: 260.1
Min nTPM: 243.1
Sample A Male 249.5
Sample B Male 247.2
Sample C Female 243.1
Sample D Female 260.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.4
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 17.0
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 14.9
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 14.4

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