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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:169.4 nTPM
HPA:124.3 nTPM
GTEx:169.4 nTPM
FANTOM5:141.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001612Antibody HPA001613Antibody CAB004393Antibody CAB068187
Endocrine cells --Not detected-
Enterocytes --Not detected-
Enterocytes - Microvilli --Not detected-
Glandular cells LowNot detected-Not detected
Goblet cells --Not detected-
Paneth cells --Not detected-






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.3
overview
Male, age 65
Small intestine sample 232
nTPM: 83
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 99.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 165.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 148.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 169.4
Samples: 187

Max nTPM: 679.6
Min nTPM: 30.6
Std nTPM: 112.6
Median nTPM: 136.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 679.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 627.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 569.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 529.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 485.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 479.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 446.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 439.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 385.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 374.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 358.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 358.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 354.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 350.8
GTEX-1192X-2526-SM-59868 50-59 years, male 343.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 339.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 329.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 328.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 327.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 321.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 312.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 308.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 301.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 290.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 290.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 289.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 288.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 277.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 253.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 253.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 251.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 250.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 248.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 245.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 244.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 243.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 243.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 237.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 232.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 231.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 224.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 223.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 223.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 218.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 217.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 215.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 214.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 213.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 211.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 202.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 202.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 201.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 198.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 197.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 195.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 194.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 192.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 191.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 189.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 188.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 183.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 181.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 181.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 180.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 178.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 176.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 175.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 173.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 172.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 171.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 171.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 170.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 168.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 166.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 164.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 163.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 160.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 157.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 157.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 156.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 156.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 153.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 152.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 151.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 150.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 149.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 149.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 147.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 146.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 146.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 143.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 142.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 138.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 136.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 136.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 135.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 135.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 134.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 134.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 131.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 130.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 129.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 127.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 125.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 123.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 122.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 122.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 120.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 120.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 118.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 118.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 117.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 116.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 115.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 112.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 109.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 108.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 108.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 108.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 107.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 104.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 102.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 101.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 100.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 100.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 98.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 98.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 98.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 97.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 96.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 96.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 96.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 96.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 94.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 93.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 93.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 89.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 89.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 88.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 87.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 86.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 86.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 86.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 85.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 85.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 84.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 83.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 82.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 82.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 82.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 80.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 79.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 77.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 76.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 75.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 75.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 75.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 74.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 74.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 70.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 70.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 69.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 69.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 68.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 68.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 67.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 67.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 66.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 66.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 66.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 64.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 64.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 63.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 60.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 59.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 59.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 58.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 57.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 57.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 54.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 52.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 48.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 48.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 46.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 31.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 30.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 141.1
FF:10024-101D6 15,40,85 years, mixed 141.1

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