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PIK3C3
HPA
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  • PIK3C3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PIK3C3
Synonyms hVps34, Vps34
Gene descriptioni

Full gene name according to HGNC.

Phosphatidylinositol 3-kinase catalytic subunit type 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 18
Cytoband q12.3
Chromosome location (bp) 41955234 - 42087830
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000078142 (version 109)
Entrez gene 5289
HGNC HGNC:8974
UniProt Q8NEB9 (UniProt - Evidence at protein level)
neXtProt NX_Q8NEB9
GeneCards PIK3C3
Antibodypedia PIK3C3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalytic subunit of the PI3K complex that mediates formation of phosphatidylinositol 3-phosphate; different complex forms are believed to play a role in multiple membrane trafficking pathways: PI3KC3-C1 is involved in initiation of autophagosomes and PI3KC3-C2 in maturation of autophagosomes and endocytosis 1, 2, 3. As part of PI3KC3-C1, promotes endoplasmic reticulum membrane curvature formation prior to vesicle budding 4. Involved in regulation of degradative endocytic trafficking and required for the abscission step in cytokinesis, probably in the context of PI3KC3-C2 5, 6. Involved in the transport of lysosomal enzyme precursors to lysosomes (By similarity). Required for transport from early to late endosomes (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Kinase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Autophagy, Cell cycle, Cell division, Lipid metabolism
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Manganese, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables 1-phosphatidylinositol-3-kinase activity. Involved in early endosome to late endosome transport and regulation of cytokinesis. Acts upstream of or within autophagy and protein lipidation. Located in autolysosome; late endosome; and midbody. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PIK3C3-201
ENSP00000262039
ENST00000262039
Q8NEB9
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000166 [nucleotide binding]
GO:0000407 [phagophore assembly site]
GO:0004672 [protein kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005770 [late endosome]
GO:0005776 [autophagosome]
GO:0005777 [peroxisome]
GO:0005829 [cytosol]
GO:0005930 [axoneme]
GO:0006468 [protein phosphorylation]
GO:0006497 [protein lipidation]
GO:0006622 [protein targeting to lysosome]
GO:0006629 [lipid metabolic process]
GO:0006897 [endocytosis]
GO:0006914 [autophagy]
GO:0007032 [endosome organization]
GO:0007049 [cell cycle]
GO:0009267 [cellular response to starvation]
GO:0010506 [regulation of autophagy]
GO:0016020 [membrane]
GO:0016236 [macroautophagy]
GO:0016241 [regulation of macroautophagy]
GO:0016301 [kinase activity]
GO:0016303 [1-phosphatidylinositol-3-kinase activity]
GO:0016310 [phosphorylation]
GO:0016485 [protein processing]
GO:0016740 [transferase activity]
GO:0030242 [autophagy of peroxisome]
GO:0030496 [midbody]
GO:0030670 [phagocytic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032465 [regulation of cytokinesis]
GO:0034271 [phosphatidylinositol 3-kinase complex, class III, type I]
GO:0034272 [phosphatidylinositol 3-kinase complex, class III, type II]
GO:0034497 [protein localization to phagophore assembly site]
GO:0035004 [phosphatidylinositol 3-kinase activity]
GO:0035032 [phosphatidylinositol 3-kinase complex, class III]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0042149 [cellular response to glucose starvation]
GO:0043201 [response to leucine]
GO:0044754 [autolysosome]
GO:0044829 [positive regulation by host of viral genome replication]
GO:0045022 [early endosome to late endosome transport]
GO:0045335 [phagocytic vesicle]
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
GO:0050708 [regulation of protein secretion]
GO:0051301 [cell division]
GO:0052742 [phosphatidylinositol kinase activity]
GO:0097352 [autophagosome maturation]
Show all
887 aa
101.5 kDa
No 0
PIK3C3-202
ENSP00000381845
ENST00000398870
A8MYT4
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0006629 [lipid metabolic process]
GO:0016301 [kinase activity]
GO:0016303 [1-phosphatidylinositol-3-kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0030496 [midbody]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
824 aa
94.4 kDa
No 0
PIK3C3-203
ENSP00000464909
ENST00000585528
K7EIV6
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
178 aa
19.8 kDa
No 0
PIK3C3-204
ENSP00000465621
ENST00000586545
K7EKH3
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
201 aa
22.8 kDa
No 0
PIK3C3-207
ENSP00000473061
ENST00000587402
M0R386
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
103 aa
11.4 kDa
No 0
PIK3C3-210
ENSP00000471957
ENST00000589056
A0A0B4J2B1
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
104 aa
11.6 kDa
No 0
PIK3C3-216
ENSP00000472926
ENST00000597477
M0R308
[Direct mapping] Phosphatidylinositol 3-kinase catalytic subunit type 3
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0046854 [phosphatidylinositol phosphate biosynthetic process]
GO:0048015 [phosphatidylinositol-mediated signaling]
Show all
183 aa
20.3 kDa
No 0

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