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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2244.3 nTPM
GTEx:2244.3 nTPM
FANTOM5:451.0 Scaled Tags Per Million
Pig:826.0 nTPM
Mouse:6294.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2244.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2244.3
Samples: 105

Max nTPM: 4017.9
Min nTPM: 687.4
Std nTPM: 755.0
Median nTPM:
172_1 72 years, female 4017.9
229_1 69 years, female 3721.5
386_1 76 years, male 3669.0
405_1 91 years, male 3640.8
352_1 62 years, male 3531.3
316_1 62 years, male 3517.7
425_1 59 years, female 3395.0
6_1 73 years, female 3385.4
237_1 82 years, male 3364.7
319_1 81 years, male 3235.3
480_1 63 years, male 3109.7
9_1 66 years, female 3099.8
447_1 81 years, male 3067.5
286_1 68 years, female 3024.5
354_1 81 years, female 2988.6
324_1 76 years, male 2972.0
251_1 78 years, male 2967.4
177_1 74 years, male 2957.8
126_1 63 years, male 2952.9
153_1 70 years, female 2937.3
189_1 76 years, male 2933.2
246_1 77 years, male 2861.3
355_1 70 years, female 2859.0
335_1 73 years, female 2849.0
35_1 74 years, female 2825.7
322_1 76 years, male 2807.2
115_1 83 years, male 2747.5
404_1 82 years, female 2708.8
406_1 79 years, male 2684.4
518_1 75 years, female 2683.9
375_1 74 years, female 2680.3
320_1 89 years, female 2670.2
243_1 75 years, male 2666.0
81_1 67 years, male 2646.6
526_1 61 years, male 2623.0
321_1 62 years, female 2613.2
163_1 78 years, male 2606.8
217_1 76 years, male 2604.0
376_1 75 years, female 2573.1
389_1 86 years, female 2547.8
318_1 68 years, male 2541.9
396_1 62 years, male 2524.1
377_1 82 years, female 2520.2
292_1 71 years, male 2499.0
347_1 72 years, male 2455.5
353_1 82 years, female 2455.5
348_1 84 years, male 2441.8
218_1 71 years, female 2429.8
468_1 89 years, male 2417.8
503_1 68 years, male 2403.3
266_1 85 years, male 2373.3
350_1 84 years, female 2359.1
356_1 87 years, female 2309.3
99_1 64 years, male 2273.3
162_1 79 years, female 2249.1
117_1 61 years, male 2245.4
43_1 64 years, female 2239.3
349_1 83 years, male 2236.0
293_1 68 years, female 2218.8
499_1 55 years, female 2217.8
32_1 67 years, male 2170.0
415_1 77 years, female 2168.2
137_1 83 years, male 2126.2
291_1 76 years, male 2104.9
394_1 75 years, female 2068.1
517_1 88 years, male 2048.9
18_1 88 years, male 2021.3
379_1 60 years, male 2010.9
264_1 73 years, female 2010.8
142_1 61 years, female 1991.3
145_1 84 years, male 1959.3
265_1 87 years, male 1948.9
466_1 57 years, female 1880.5
254_1 77 years, female 1763.2
311_1 78 years, male 1726.9
384_1 83 years, male 1713.7
506_1 65 years, male 1688.4
351_1 91 years, male 1651.3
288_1 66 years, female 1637.2
414_1 84 years, female 1588.3
313_1 79 years, female 1555.5
17_1 71 years, male 1537.7
495_1 57 years, female 1515.9
120_1 70 years, female 1491.4
149_1 88 years, male 1458.9
173_1 67 years, male 1456.7
315_1 62 years, female 1454.6
2_1 77 years, female 1386.0
109_1 81 years, female 1322.0
317_1 60 years, male 1314.7
490_1 67 years, female 1305.3
139_1 64 years, female 1291.6
452_1 88 years, female 1262.2
307_1 66 years, female 1253.5
4_1 88 years, female 1247.9
42_1 85 years, male 1190.3
314_1 67 years, male 1138.5
119_1 70 years, female 1126.2
413_1 59 years, female 1047.8
295_1 61 years, female 1044.4
501_1 88 years, male 836.4
89_1 63 years, male 818.2
41_1 94 years, female 780.9
491_1 89 years, female 697.0
308_1 70 years, female 687.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

451.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 451.0
FF:10030-101E3 24-65 years, mixed 451.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

826.0
Pig sample Sample description nTPM
Retina
nTPM: 826.0
Samples: 4

Max nTPM: 910.0
Min nTPM: 745.3
Sample A Female 745.3
Sample B Female 888.9
Sample C Male 910.0
Sample D Male 759.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6294.1
Mouse sample Sample description nTPM
Retina
nTPM: 6294.1
Samples: 4

Max nTPM: 6965.2
Min nTPM: 5631.6
Sample A Male 6965.2
Sample B Male 6018.7
Sample C Female 5631.6
Sample D Female 6560.9

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