MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.7 nTPM
HPA Brain:78.2 nTPM
GTEx:86.7 nTPM
FANTOM5:57.1 Scaled Tags Per Million
Pig:32.6 nTPM
Mouse:124.8 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.3
2019 Male, age 18, unknown 71.2
1833 Male, age 53, unknown 63.7
2666 Male, age 74, left hemisphere 52.9
1870 Female, age 42, unknown 50.6
1830 Male, age 51, unknown 49.0
2219 Male, age 76, both hemispheres 45.3
2828 Female, age 72, unknown 41.9
2411 Female, age 72, unknown 36.2
1827 Male, age 72, unknown 35.3
2586 Male, age 75, left hemisphere 7.2
Dorsal raphe nucleus
nTPM: 40.2
2750 Male, age 76, both hemispheres 51.7
2016 Female, age 72, unknown 42.0
2298 Female, age 72, unknown 40.8
1828 Male, age 53, unknown 38.9
2047 Male, age 72, unknown 27.5
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 59.2
1848 Female, age 42, unknown 44.4
1890 Male, age 53, unknown 43.9
2849 Male, age 72, unknown 31.4
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 42.5
2502 Female, age 75, unknown 70.0
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 45.5
1831 Male, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 19.9
Periaquaductal grey, lateral
nTPM: 32.1
2272 Male, age 74, both hemispheres 40.9
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 20.7
Pretectal area
nTPM: 44.4
1817 Female, age 42, unknown 66.9
2007 Male, age 72, unknown 60.5
1815 Male, age 53, unknown 54.4
1944 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 47.9
2667 Female, age 75, unknown 46.4
2316 Male, age 76, right hemisphere 43.0
2273 Male, age 74, both hemispheres 36.7
2224 Female, age 72, unknown 36.2
2825 Male, age 18, unknown 27.0
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 78.2
1954 Female, age 42, unknown 129.3
1904 Male, age 53, unknown 120.5
1821 Female, age 72, unknown 111.1
2823 Male, age 76, right hemisphere 111.1
2503 Female, age 72, unknown 92.4
1865 Male, age 51, unknown 86.5
2785 Male, age 18, unknown 69.0
2227 Male, age 72, unknown 68.1
2769 Male, age 72, unknown 66.2
2725 Female, age 75, unknown 32.4
2588 Male, age 74, left hemisphere 30.2
2584 Male, age 75, left hemisphere 21.5
Substantia nigra
nTPM: 41.5
2665 Male, age 74, both hemispheres 81.9
1889 Female, age 72, unknown 52.1
2241 Male, age 72, unknown 51.6
1851 Male, age 51, unknown 38.3
2409 Female, age 72, unknown 37.5
2590 Female, age 75, unknown 35.7
1916 Female, age 42, unknown 33.6
1941 Male, age 53, unknown 33.5
2699 Male, age 18, unknown 29.0
2583 Male, age 75, right hemisphere 21.3
Superior colliculus
nTPM: 42.4
1895 Male, age 76, right hemisphere 67.5
1913 Female, age 42, unknown 55.3
2087 Female, age 72, unknown 55.0
2587 Male, age 74, left hemisphere 44.4
2668 Female, age 75, unknown 43.3
2261 Male, age 18, unknown 42.5
1995 Male, age 72, unknown 41.4
1839 Male, age 51, unknown 39.3
1796 Male, age 53, unknown 25.6
2664 Male, age 75, both hemispheres 10.1
Ventral tegmental area
nTPM: 35.6
2410 Female, age 72, unknown 45.5
2223 Female, age 72, unknown 41.0
2218 Male, age 76, both hemispheres 35.3
1942 Male, age 51, unknown 33.8
1915 Female, age 42, unknown 33.2
2021 Male, age 53, unknown 24.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.7
Samples: 139

Max nTPM: 273.8
Min nTPM: 17.9
Std nTPM: 44.4
Median nTPM: 73.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 273.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 233.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 209.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 190.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 190.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 188.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 173.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 167.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 165.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 165.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 160.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.1
FF:10158-103A5 76 years, female 57.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 28.4
Sample A Female 41.2
Sample B Female 32.0
Sample C Male 28.7
Sample D Male 28.4
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 30.8
Min nTPM: 24.2
Sample A Female 28.3
Sample B Female 30.8
Sample C Male 24.3
Sample D Male 24.2
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 27.5
Min nTPM: 26.7
Sample B Female 27.5
Sample C Male 26.7
Sample D Male 27.2
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 21.2
Sample A Female 33.2
Sample B Female 21.2
Sample C Male 31.8
Sample D Male 39.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.8
Samples: 4

Max nTPM: 132.5
Min nTPM: 119.4
Sample A Male 132.5
Sample B Male 126.9
Sample C Female 119.4
Sample D Female 120.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 2.8
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 1.4

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