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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:87.0 nTPM
FANTOM5:147.6 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:28.9 nTPM
Allen mouse:4.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 83.1
2396 Male, age 61, right hemisphere 95.8
2497 Male, age 66, unknown 79.4
2032 Female, age 42, unknown 74.1
Centromedial thalamic nucleus
nTPM: 87.0
2279 Female, age 85, left hemisphere 87.7
2401 Male, age 76, right hemisphere 86.3
Habenula
nTPM: 71.7
1957 Male, age 80, both hemispheres 79.3
2203 Male, age 61, left hemisphere 75.1
2252 Male, age 62, unknown 69.0
2276 Male, age 66, unknown 63.5
Lateral geniculate body
nTPM: 78.9
2575 Female, age 94, right hemisphere 87.0
1953 Male, age 62, unknown 82.9
2659 Male, age 66, unknown 81.8
2399 Male, age 61, left hemisphere 81.2
2841 Male, age 80, both hemispheres 80.8
2035 Female, age 72, unknown 75.9
2857 Male, age 74, right hemisphere 73.7
2106 Female, age 67, right hemisphere 67.5
Lateral thalamic nuclei
nTPM: 77.2
2765 Female, age 67, both hemispheres 83.0
1903 Male, age 76, left hemisphere 77.6
2661 Female, age 72, unknown 76.3
2577 Male, age 74, both hemispheres 75.3
2573 Female, age 94, left hemisphere 73.6
Medial dorsal thalamic nucleus
nTPM: 73.2
2660 Female, age 72, unknown 78.0
1859 Male, age 76, both hemispheres 77.9
2402 Female, age 67, both hemispheres 75.5
2572 Female, age 94, right hemisphere 75.2
2498 Male, age 66, unknown 74.4
1810 Male, age 48, unknown 73.2
1930 Female, age 42, unknown 72.6
2039 Female, age 72, unknown 72.6
2026 Male, age 62, unknown 72.4
2492 Male, age 75, right hemisphere 72.2
1971 Male, age 61, right hemisphere 71.5
2283 Male, age 80, right hemisphere 70.3
2576 Male, age 74, both hemispheres 65.9
Medial geniculate body
nTPM: 78.2
1811 Female, age 42, unknown 87.3
2571 Male, age 75, right hemisphere 80.2
2049 Male, age 76, both hemispheres 77.8
2207 Male, age 80, right hemisphere 76.5
2657 Male, age 74, right hemisphere 76.0
2650 Female, age 94, left hemisphere 75.9
2217 Female, age 72, unknown 74.0
Nucleus reuniens
nTPM: 78.1
2210 Female, age 85, left hemisphere 90.8
2205 Male, age 80, left hemisphere 75.1
2212 Female, age 67, left hemisphere 68.4
Nucleus rhomboideus
nTPM: 78.9
2280 Female, age 85, left hemisphere 81.9
2213 Female, age 67, left hemisphere 78.3
2206 Male, age 80, both hemispheres 76.5
Posterior thalamic nucleus
nTPM: 76.4
2649 Female, age 94, both hemispheres 90.8
2495 Female, age 67, right hemisphere 73.7
2655 Male, age 74, right hemisphere 71.8
2266 Male, age 76, right hemisphere 69.0
Pulvinar
nTPM: 76.9
2724 Male, age 74, right hemisphere 82.9
2499 Male, age 66, unknown 80.4
2398 Male, age 61, left hemisphere 79.2
2214 Male, age 76, right hemisphere 78.9
1929 Male, age 48, unknown 76.9
1932 Male, age 80, right hemisphere 76.3
1972 Male, age 62, unknown 74.0
2582 Female, age 72, unknown 74.0
2496 Female, age 67, right hemisphere 73.2
1899 Female, age 42, unknown 72.8
Subthalamic nucleus
nTPM: 75.3
2282 Male, age 61, both hemispheres 84.3
2124 Male, age 62, unknown 80.6
2056 Female, age 72, unknown 77.4
2658 Male, age 74, both hemispheres 76.9
2275 Male, age 66, unknown 74.1
2216 Male, age 48, unknown 72.0
2779 Female, age 42, unknown 71.5
2406 Female, age 72, unknown 65.2
Ventral posterolateral thalamic nucleus
nTPM: 76.1
2397 Male, age 61, right hemisphere 79.2
2197 Male, age 80, both hemispheres 78.6
2578 Male, age 74, both hemispheres 78.4
2570 Male, age 75, right hemisphere 76.7
2740 Male, age 76, right hemisphere 74.7
2581 Female, age 72, unknown 69.3
Ventral posteromedial thalamic nucleus
nTPM: 73.4
2127 Male, age 76, right hemisphere 77.5
2281 Male, age 75, right hemisphere 76.0
2202 Male, age 61, left hemisphere 74.0
2758 Male, age 80, both hemispheres 71.3
2653 Male, age 74, both hemispheres 67.9
Ventral thalamic nuclei
nTPM: 78.7
2580 Male, age 66, unknown 88.7
1845 Male, age 48, unknown 81.7
1860 Male, age 76, both hemispheres 81.3
2291 Female, age 72, unknown 78.5
2204 Male, age 80, both hemispheres 78.1
2652 Male, age 74, left hemisphere 77.4
1912 Female, age 42, unknown 76.5
2858 Female, age 72, unknown 73.2
2285 Male, age 62, unknown 73.1
Zona incerta
nTPM: 79.6
2822 Male, age 74, right hemisphere 84.4
2403 Male, age 62, unknown 83.0
2215 Male, age 66, unknown 81.2
2663 Female, age 72, unknown 78.0
2208 Male, age 80, right hemisphere 71.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

147.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 147.6
FF:10154-103A1 76 years, female 147.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
Pig sample Sample description nTPM
Thalamus
nTPM: 54.9
Samples: 4

Max nTPM: 58.0
Min nTPM: 51.0
Sample A Female 51.0
Sample B Female 52.9
Sample C Male 57.8
Sample D Male 58.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 28.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 23.8
Sample A Male 28.1
Sample B Male 32.4
Sample C Female 23.8
Sample D Female 31.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 4.7
69782850 Antisense, RP_050505_03_H05, Mouse strain C57BL/6J (56 days, male) 4.7

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