We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CDH17
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CDH17
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:263.1 nTPM
HPA:263.1 nTPM
GTEx:94.0 nTPM
FANTOM5:996.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023614Antibody HPA023616Antibody HPA026556Antibody CAB025143
Endocrine cells -High--
Enterocytes -High--
Enterocytes - Microvilli -Not detected--
Glandular cells Medium-HighHigh
Goblet cells -High--
Paneth cells -High--








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.1
overview
Male, age 65
Small intestine sample 232
nTPM: 342.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 287.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 173.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 248.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 94.0
Samples: 187

Max nTPM: 439.2
Min nTPM: 0.0
Std nTPM: 98.3
Median nTPM: 62.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 439.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 371.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 352.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 337.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 320.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 311.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 309.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 303.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 299.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 275.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 273.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 262.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 259.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 259.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 252.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 248.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 245.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 245.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 244.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 241.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 239.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 237.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 237.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 236.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 232.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 229.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 228.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 221.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 218.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 212.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 211.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 210.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 207.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 200.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 193.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 183.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 182.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 178.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 178.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 177.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 174.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 171.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 170.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 168.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 164.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 163.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 161.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 157.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 153.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 150.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 149.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 147.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 141.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 136.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 135.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 133.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 133.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 130.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 129.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 124.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 124.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 121.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 118.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 118.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 114.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 110.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 108.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 106.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 105.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 103.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 99.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 99.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 98.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 96.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 95.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 93.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 91.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 91.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 90.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 90.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 90.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 86.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 85.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 83.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 83.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 81.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 80.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 80.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 67.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 67.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 66.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 66.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 63.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 62.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 61.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 55.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 54.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 54.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 52.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 44.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 44.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 42.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 42.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 42.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 41.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 39.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 39.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 37.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 34.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 29.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 28.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 27.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 27.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 26.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 26.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 25.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 23.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 22.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 22.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 20.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 20.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 19.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 19.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 19.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 18.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 17.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 16.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 16.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 15.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 14.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 13.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 13.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 11.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 11.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 11.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 10.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 10.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 9.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 9.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 8.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 7.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 7.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 6.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 6.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.4
GTEX-1192X-2526-SM-59868 50-59 years, male 0.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

996.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 996.2
FF:10024-101D6 15,40,85 years, mixed 996.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org