MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.2 nTPM
HPA Brain:52.5 nTPM
GTEx:81.2 nTPM
FANTOM5:228.4 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:75.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.6
2411 Female, age 72, unknown 57.1
1830 Male, age 51, unknown 55.9
1833 Male, age 53, unknown 50.6
1870 Female, age 42, unknown 49.5
2828 Female, age 72, unknown 49.2
1827 Male, age 72, unknown 43.9
2219 Male, age 76, both hemispheres 37.1
2586 Male, age 75, left hemisphere 34.8
2019 Male, age 18, unknown 34.0
2666 Male, age 74, left hemisphere 33.9
Dorsal raphe nucleus
nTPM: 48.1
2750 Male, age 76, both hemispheres 62.6
2298 Female, age 72, unknown 50.4
2047 Male, age 72, unknown 46.1
1828 Male, age 53, unknown 41.4
2016 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 41.4
2849 Male, age 72, unknown 48.7
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 36.2
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Periaquaductal grey, anterior
nTPM: 44.2
1947 Male, age 18, unknown 48.4
1795 Male, age 51, unknown 43.2
2502 Female, age 75, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 40.2
2464 Female, age 72, unknown 45.5
2850 Male, age 76, both hemispheres 39.9
1831 Male, age 72, unknown 38.6
1840 Male, age 53, unknown 37.0
Periaquaductal grey, lateral
nTPM: 44.2
2053 Male, age 18, unknown 44.5
2272 Male, age 74, both hemispheres 44.1
2140 Male, age 76, both hemispheres 43.8
Pretectal area
nTPM: 43.1
2667 Female, age 75, unknown 53.6
2273 Male, age 74, both hemispheres 52.7
2316 Male, age 76, right hemisphere 50.6
2825 Male, age 18, unknown 49.3
2224 Female, age 72, unknown 46.7
2407 Male, age 75, both hemispheres 42.0
1815 Male, age 53, unknown 41.5
1817 Female, age 42, unknown 36.9
2007 Male, age 72, unknown 35.4
1944 Female, age 72, unknown 35.0
1816 Male, age 51, unknown 30.4
Red nucleus
nTPM: 43.2
1865 Male, age 51, unknown 53.7
2503 Female, age 72, unknown 46.3
1821 Female, age 72, unknown 46.1
1954 Female, age 42, unknown 45.8
2769 Male, age 72, unknown 45.8
2227 Male, age 72, unknown 44.7
2823 Male, age 76, right hemisphere 42.9
2725 Female, age 75, unknown 42.2
2588 Male, age 74, left hemisphere 41.3
1904 Male, age 53, unknown 39.7
2785 Male, age 18, unknown 39.4
2584 Male, age 75, left hemisphere 31.0
Substantia nigra
nTPM: 36.1
1941 Male, age 53, unknown 44.1
2699 Male, age 18, unknown 42.4
1916 Female, age 42, unknown 40.1
1851 Male, age 51, unknown 35.2
2583 Male, age 75, right hemisphere 35.1
2409 Female, age 72, unknown 33.4
2665 Male, age 74, both hemispheres 32.9
1889 Female, age 72, unknown 32.8
2590 Female, age 75, unknown 32.8
2241 Male, age 72, unknown 32.7
Superior colliculus
nTPM: 43.7
1913 Female, age 42, unknown 50.4
1839 Male, age 51, unknown 46.6
1995 Male, age 72, unknown 46.2
1895 Male, age 76, right hemisphere 45.3
1796 Male, age 53, unknown 45.1
2587 Male, age 74, left hemisphere 45.0
2668 Female, age 75, unknown 41.3
2087 Female, age 72, unknown 41.0
2261 Male, age 18, unknown 40.2
2664 Male, age 75, both hemispheres 35.5
Ventral tegmental area
nTPM: 45.8
2223 Female, age 72, unknown 56.7
2218 Male, age 76, both hemispheres 48.8
2021 Male, age 53, unknown 47.8
2410 Female, age 72, unknown 46.4
1942 Male, age 51, unknown 38.4
1915 Female, age 42, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 81.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.2
Samples: 139

Max nTPM: 160.3
Min nTPM: 41.7
Std nTPM: 22.4
Median nTPM: 76.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 160.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 142.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 141.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 133.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 126.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 124.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 122.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 122.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 122.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 121.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 121.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 228.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.4
FF:10158-103A5 76 years, female 228.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.7
Samples: 4

Max nTPM: 100.3
Min nTPM: 54.3
Sample A Female 100.3
Sample B Female 54.3
Sample C Male 76.7
Sample D Male 59.3
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 152.2
Min nTPM: 54.0
Sample A Female 152.2
Sample B Female 84.0
Sample C Male 54.0
Sample D Male 55.1
Periaqueductal gray
nTPM: 75.7
Samples: 3

Max nTPM: 82.0
Min nTPM: 66.8
Sample B Female 78.3
Sample C Male 82.0
Sample D Male 66.8
Superior colliculi
nTPM: 62.4
Samples: 4

Max nTPM: 73.3
Min nTPM: 53.9
Sample A Female 73.3
Sample B Female 53.9
Sample C Male 60.4
Sample D Male 61.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 80.0
Min nTPM: 69.9
Sample A Male 80.0
Sample B Male 76.2
Sample C Female 69.9
Sample D Female 76.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75041432 Antisense, RP_060412_04_B02, Mouse strain C57BL/6J (56 days, male) 2.3
71232692 Antisense, RP_050428_03_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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