MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.7 nTPM
HPA Brain:198.3 nTPM
GTEx:95.7 nTPM
FANTOM5:271.3 Scaled Tags Per Million
Pig:159.6 nTPM
Mouse:55.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 198.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 180.8
1870 Female, age 42, unknown 211.8
1833 Male, age 53, unknown 205.1
1830 Male, age 51, unknown 204.9
2666 Male, age 74, left hemisphere 191.6
2019 Male, age 18, unknown 189.9
2828 Female, age 72, unknown 184.3
2411 Female, age 72, unknown 167.9
1827 Male, age 72, unknown 161.8
2586 Male, age 75, left hemisphere 153.8
2219 Male, age 76, both hemispheres 136.5
Dorsal raphe nucleus
nTPM: 152.3
2750 Male, age 76, both hemispheres 199.4
2016 Female, age 72, unknown 170.2
1828 Male, age 53, unknown 153.7
2047 Male, age 72, unknown 121.9
2298 Female, age 72, unknown 116.6
Inferior colliculus
nTPM: 160.6
2849 Male, age 72, unknown 174.4
1890 Male, age 53, unknown 174.2
1848 Female, age 42, unknown 154.7
2097 Female, age 72, unknown 139.1
Median raphe nucleus
nTPM: 150.2
2220 Male, age 76, midline 150.2
Periaquaductal grey, anterior
nTPM: 117.9
1795 Male, age 51, unknown 120.7
2502 Female, age 75, unknown 120.1
1947 Male, age 18, unknown 112.8
Periaquaductal grey, dorsal
nTPM: 157.8
2850 Male, age 76, both hemispheres 175.5
1831 Male, age 72, unknown 167.4
2464 Female, age 72, unknown 150.8
1840 Male, age 53, unknown 137.5
Periaquaductal grey, lateral
nTPM: 150.2
2140 Male, age 76, both hemispheres 169.1
2272 Male, age 74, both hemispheres 141.1
2053 Male, age 18, unknown 140.5
Pretectal area
nTPM: 156.7
2407 Male, age 75, both hemispheres 202.1
2667 Female, age 75, unknown 184.6
1815 Male, age 53, unknown 175.2
2316 Male, age 76, right hemisphere 166.4
2825 Male, age 18, unknown 150.0
1944 Female, age 72, unknown 147.9
2273 Male, age 74, both hemispheres 144.1
1817 Female, age 42, unknown 143.2
2007 Male, age 72, unknown 142.8
1816 Male, age 51, unknown 139.5
2224 Female, age 72, unknown 128.0
Red nucleus
nTPM: 198.3
2503 Female, age 72, unknown 224.2
1865 Male, age 51, unknown 223.4
1904 Male, age 53, unknown 216.6
2769 Male, age 72, unknown 209.2
1821 Female, age 72, unknown 203.1
2785 Male, age 18, unknown 202.5
2227 Male, age 72, unknown 201.5
2823 Male, age 76, right hemisphere 197.2
1954 Female, age 42, unknown 192.6
2584 Male, age 75, left hemisphere 189.4
2588 Male, age 74, left hemisphere 168.6
2725 Female, age 75, unknown 150.7
Substantia nigra
nTPM: 174.8
2699 Male, age 18, unknown 240.0
2665 Male, age 74, both hemispheres 232.3
2583 Male, age 75, right hemisphere 188.5
1851 Male, age 51, unknown 177.3
2409 Female, age 72, unknown 169.7
2241 Male, age 72, unknown 157.8
2590 Female, age 75, unknown 157.2
1889 Female, age 72, unknown 151.6
1916 Female, age 42, unknown 141.4
1941 Male, age 53, unknown 132.1
Superior colliculus
nTPM: 177.9
1913 Female, age 42, unknown 263.0
1995 Male, age 72, unknown 221.5
2668 Female, age 75, unknown 205.1
2587 Male, age 74, left hemisphere 186.4
1895 Male, age 76, right hemisphere 157.3
2664 Male, age 75, both hemispheres 157.3
1796 Male, age 53, unknown 153.7
2087 Female, age 72, unknown 152.9
1839 Male, age 51, unknown 149.9
2261 Male, age 18, unknown 131.6
Ventral tegmental area
nTPM: 172.6
2223 Female, age 72, unknown 225.0
2021 Male, age 53, unknown 180.5
2218 Male, age 76, both hemispheres 165.0
2410 Female, age 72, unknown 162.7
1942 Male, age 51, unknown 160.9
1915 Female, age 42, unknown 141.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 95.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.7
Samples: 139

Max nTPM: 254.9
Min nTPM: 30.7
Std nTPM: 37.9
Median nTPM: 90.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 254.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 233.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 176.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 175.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 172.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 170.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 169.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 166.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 163.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 163.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 161.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 271.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 271.3
FF:10158-103A5 76 years, female 271.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 159.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 159.6
Samples: 4

Max nTPM: 188.3
Min nTPM: 146.4
Sample A Female 153.8
Sample B Female 149.9
Sample C Male 146.4
Sample D Male 188.3
Midbrain
nTPM: 150.4
Samples: 4

Max nTPM: 234.1
Min nTPM: 95.2
Sample A Female 234.1
Sample B Female 174.9
Sample C Male 95.2
Sample D Male 97.3
Periaqueductal gray
nTPM: 158.2
Samples: 3

Max nTPM: 166.6
Min nTPM: 144.7
Sample B Female 166.6
Sample C Male 163.2
Sample D Male 144.7
Superior colliculi
nTPM: 118.5
Samples: 4

Max nTPM: 134.8
Min nTPM: 101.0
Sample A Female 134.8
Sample B Female 101.0
Sample C Male 107.7
Sample D Male 130.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.8
Samples: 4

Max nTPM: 58.3
Min nTPM: 52.9
Sample A Male 56.8
Sample B Male 52.9
Sample C Female 55.2
Sample D Female 58.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69013579 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 0.9
70431433 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 0.5
70608511 Antisense, RP_050630_01_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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