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SLC4A4
HPA
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  • SLC4A4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC4A4
Synonyms hhNMC, HNBC1, NBC1, NBC2, pNBC, SLC4A5
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 4 member 4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 4
Cytoband q13.3
Chromosome location (bp) 71062667 - 71572087
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000080493 (version 109)
Entrez gene 8671
HGNC HGNC:11030
UniProt Q9Y6R1 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y6R1
GeneCards SLC4A4
Antibodypedia SLC4A4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Electrogenic sodium/bicarbonate cotransporter with a Na(+):HCO3(-) stoichiometry varying from 1:2 to 1:3. May regulate bicarbonate influx/efflux at the basolateral membrane of cells and regulate intracellular pH.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Sodium transport, Symport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a sodium bicarbonate cotransporter (NBC) involved in the regulation of bicarbonate secretion and absorption and intracellular pH. Mutations in this gene are associated with proximal renal tubular acidosis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC4A4-201
ENSP00000264485
ENST00000264485
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
1079 aa
121.5 kDa
No >9
SLC4A4-202
ENSP00000344272
ENST00000340595
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
1035 aa
116 kDa
No >9
SLC4A4-203
ENSP00000307349
ENST00000351898
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
995 aa
112.3 kDa
No 9
SLC4A4-204
ENSP00000393557
ENST00000425175
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
A5JJ20
[Target identity:100%; Query identity:100%] Anion exchange protein
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
1094 aa
123.2 kDa
No >9
SLC4A4-205
ENSP00000422400
ENST00000512686
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
646 aa
72 kDa
No 4
SLC4A4-207
ENSP00000492496
ENST00000638464
A0A1W2PRU6
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0016020 [membrane]
Show all
130 aa
15.1 kDa
No 0
SLC4A4-208
ENSP00000491107
ENST00000639096
A0A1W2PNW8
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0016020 [membrane]
Show all
171 aa
20 kDa
No 0
SLC4A4-209
ENSP00000497468
ENST00000649996
Q9Y6R1
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0036376 [sodium ion export across plasma membrane]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045821 [positive regulation of glycolytic process]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0070062 [extracellular exosome]
GO:0098656 [anion transmembrane transport]
GO:0150104 [transport across blood-brain barrier]
Show all
1079 aa
121.5 kDa
No >9
SLC4A4-210
ENSP00000513771
ENST00000698522
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
1027 aa
115.9 kDa
No 9

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