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  • HSP90AA1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:237.5 nTPM
HPA:237.5 nTPM
GTEx:190.8 nTPM
FANTOM5:575.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB002058
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.5
overview
Male, age 65
Small intestine sample 232
nTPM: 279
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 239.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 190.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 241.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 190.8
Samples: 187

Max nTPM: 1029.4
Min nTPM: 90.3
Std nTPM: 98.7
Median nTPM: 171.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1029.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 572.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 506.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 503.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 430.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 397.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 393.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 353.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 347.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 345.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 338.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 337.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 320.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 316.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 308.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 305.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 295.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 293.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 288.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 285.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 278.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 274.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 274.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 265.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 261.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 259.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 254.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 254.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 249.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 244.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 240.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 238.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 235.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 230.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 228.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 227.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 222.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 221.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 219.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 216.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 216.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 214.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 214.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 214.1
GTEX-1192X-2526-SM-59868 50-59 years, male 213.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 213.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 212.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 211.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 210.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 208.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 207.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 207.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 206.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 206.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 206.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 205.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 200.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 200.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 199.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 198.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 195.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 195.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 194.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 193.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 192.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 192.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 190.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 188.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 188.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 186.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 185.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 184.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 184.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 183.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 183.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 182.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 182.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 181.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 180.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 180.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 180.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 179.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 178.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 178.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 177.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 176.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 176.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 176.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 176.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 176.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 174.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 174.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 172.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 171.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 169.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 167.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 166.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 166.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 163.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 162.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 161.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 159.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 159.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 158.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 158.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 157.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 157.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 157.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 157.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 153.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 152.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 152.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 152.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 152.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 151.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 150.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 149.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 149.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 147.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 147.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 147.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 147.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 146.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 146.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 146.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 146.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 145.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 145.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 144.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 143.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 143.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 141.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 140.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 140.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 139.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 137.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 137.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 136.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 135.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 135.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 134.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 134.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 133.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 133.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 132.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 131.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 131.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 130.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 130.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 129.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 129.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 128.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 128.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 126.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 126.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 125.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 121.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 121.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 120.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 119.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 119.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 119.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 118.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 118.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 117.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 115.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 115.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 115.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 114.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 114.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 113.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 113.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 113.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 112.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 108.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 107.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 105.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 105.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 104.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 104.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 102.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 100.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 99.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 95.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 95.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 92.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 90.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

575.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 575.2
FF:10024-101D6 15,40,85 years, mixed 575.2

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