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  • DLGAP4
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:43.0 nTPM
HPA Brain:130.6 nTPM
GTEx:43.0 nTPM
FANTOM5:134.4 Scaled Tags Per Million
Pig:68.0 nTPM
Mouse:117.2 nTPM
Allen mouse:13.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.6
Sample id Sample description nTPM
Amygdala
nTPM: 92.2
2814 Male, age 76, right hemisphere 117.0
2517 Female, age 94, left hemisphere 102.6
1987 Female, age 91, left hemisphere 85.6
2514 Male, age 75, right hemisphere 78.4
2695 Female, age 67, right hemisphere 77.2
Basal amygdala
nTPM: 130.6
2243 Female, age 91, right hemisphere 161.1
2685 Female, age 94, left hemisphere 143.0
2827 Female, age 67, right hemisphere 141.1
2110 Male, age 80, left hemisphere 119.9
2609 Male, age 75, right hemisphere 109.6
1955 Male, age 76, both hemispheres 108.9
Central amygdala
nTPM: 110.3
2826 Female, age 94, left hemisphere 130.0
2239 Male, age 80, left hemisphere 124.6
1905 Male, age 76, both hemispheres 112.1
2701 Female, age 91, right hemisphere 94.9
2515 Male, age 75, right hemisphere 90.0
Corticomedial amygdala
nTPM: 123.5
2535 Female, age 67, right hemisphere 155.6
2829 Male, age 80, left hemisphere 141.1
2242 Female, age 91, right hemisphere 138.9
2240 Male, age 76, both hemispheres 110.0
2429 Female, age 94, left hemisphere 105.5
2428 Male, age 75, right hemisphere 90.2
Lateral amygdala
nTPM: 103.1
2534 Female, age 94, left hemisphere 127.9
2256 Male, age 80, left hemisphere 112.6
2255 Female, age 91, right hemisphere 111.0
2830 Female, age 67, right hemisphere 98.6
1883 Male, age 76, both hemispheres 93.9
2516 Male, age 75, right hemisphere 74.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 43.0
Samples: 152

Max nTPM: 87.5
Min nTPM: 19.7
Std nTPM: 12.0
Median nTPM: 42.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 87.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 70.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 70.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 68.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 66.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 66.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 65.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 63.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 61.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 60.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 60.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 58.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 56.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 55.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 53.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 53.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 53.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 52.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 52.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 51.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 51.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 51.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 51.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 48.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 48.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 48.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 48.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 48.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 47.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 47.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 47.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 46.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 46.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 46.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 46.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 45.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 45.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 45.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 45.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 45.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 44.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 44.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 44.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 43.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 43.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 43.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 43.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 43.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 43.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 42.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 41.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 40.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 40.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 39.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 39.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 39.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 39.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 39.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 38.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 38.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 38.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 38.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 38.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 37.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 37.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 37.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 37.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 37.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 37.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 36.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 36.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 36.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 35.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 35.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 35.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 34.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 34.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 33.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 33.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 32.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 32.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 31.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 31.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 31.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 31.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 30.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 28.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 28.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 27.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 27.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 27.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 26.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 26.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 25.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 25.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 23.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 22.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 21.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 20.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 20.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 19.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 19.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 134.4
FF:10151-102I7 76 years, female 134.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.0
Pig sample Sample description nTPM
Amygdala
nTPM: 68.0
Samples: 4

Max nTPM: 87.4
Min nTPM: 51.1
Sample A Female 87.4
Sample B Female 51.1
Sample C Male 66.3
Sample D Male 67.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 117.2
Samples: 4

Max nTPM: 127.5
Min nTPM: 112.0
Sample A Male 116.6
Sample B Male 112.0
Sample C Female 127.5
Sample D Female 112.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.6
68499267 Antisense, RP_050118_01_C03, Mouse strain C57BL/6J (56 days, male) 13.6

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