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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:296.1 nTPM
GTEx:296.1 nTPM
FANTOM5:125.9 Scaled Tags Per Million
Pig:340.6 nTPM
Mouse:170.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008779
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Low
Inner plexiform layer Not detected
Ganglion cells Medium
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA015907
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 296.1
Samples: 105

Max nTPM: 652.7
Min nTPM: 115.4
Std nTPM: 91.3
Median nTPM:
490_1 67 years, female 652.7
117_1 61 years, male 498.0
491_1 89 years, female 478.4
89_1 63 years, male 471.8
217_1 76 years, male 456.0
526_1 61 years, male 445.4
32_1 67 years, male 442.2
415_1 77 years, female 429.7
311_1 78 years, male 428.2
495_1 57 years, female 409.1
139_1 64 years, female 409.0
149_1 88 years, male 404.3
162_1 79 years, female 404.2
6_1 73 years, female 403.0
119_1 70 years, female 400.6
499_1 55 years, female 388.7
447_1 81 years, male 386.0
347_1 72 years, male 384.3
324_1 76 years, male 378.8
81_1 67 years, male 377.0
414_1 84 years, female 369.2
466_1 57 years, female 367.6
307_1 66 years, female 363.9
321_1 62 years, female 363.6
313_1 79 years, female 362.9
142_1 61 years, female 360.8
251_1 78 years, male 354.1
126_1 63 years, male 353.2
43_1 64 years, female 351.2
9_1 66 years, female 347.2
2_1 77 years, female 346.5
348_1 84 years, male 341.9
352_1 62 years, male 337.8
35_1 74 years, female 332.0
246_1 77 years, male 331.9
468_1 89 years, male 329.6
266_1 85 years, male 327.5
153_1 70 years, female 324.0
293_1 68 years, female 323.3
18_1 88 years, male 323.1
115_1 83 years, male 317.7
229_1 69 years, female 316.2
145_1 84 years, male 309.1
315_1 62 years, female 307.3
322_1 76 years, male 302.6
518_1 75 years, female 300.7
350_1 84 years, female 296.9
99_1 64 years, male 291.8
413_1 59 years, female 289.7
172_1 72 years, female 289.1
425_1 59 years, female 288.6
237_1 82 years, male 288.3
480_1 63 years, male 287.7
389_1 86 years, female 282.8
375_1 74 years, female 282.4
286_1 68 years, female 281.0
120_1 70 years, female 278.4
42_1 85 years, male 277.0
355_1 70 years, female 276.4
386_1 76 years, male 272.4
406_1 79 years, male 271.9
319_1 81 years, male 267.4
317_1 60 years, male 263.8
292_1 71 years, male 263.3
405_1 91 years, male 261.2
137_1 83 years, male 261.1
308_1 70 years, female 260.1
109_1 81 years, female 252.8
335_1 73 years, female 250.1
243_1 75 years, male 248.0
173_1 67 years, male 247.2
396_1 62 years, male 244.9
503_1 68 years, male 244.5
316_1 62 years, male 242.9
189_1 76 years, male 241.3
17_1 71 years, male 240.6
291_1 76 years, male 239.7
41_1 94 years, female 239.2
517_1 88 years, male 237.2
218_1 71 years, female 235.9
320_1 89 years, female 234.0
265_1 87 years, male 233.7
384_1 83 years, male 231.4
254_1 77 years, female 230.7
177_1 74 years, male 229.3
318_1 68 years, male 227.9
376_1 75 years, female 217.7
349_1 83 years, male 213.0
404_1 82 years, female 209.6
354_1 81 years, female 198.6
351_1 91 years, male 197.2
377_1 82 years, female 194.1
353_1 82 years, female 189.4
163_1 78 years, male 184.3
394_1 75 years, female 183.7
379_1 60 years, male 181.7
4_1 88 years, female 174.5
356_1 87 years, female 171.2
314_1 67 years, male 159.4
288_1 66 years, female 157.7
501_1 88 years, male 155.4
264_1 73 years, female 151.3
506_1 65 years, male 122.1
295_1 61 years, female 117.9
452_1 88 years, female 115.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 125.9
FF:10030-101E3 24-65 years, mixed 125.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.6
Pig sample Sample description nTPM
Retina
nTPM: 340.6
Samples: 4

Max nTPM: 348.7
Min nTPM: 332.0
Sample A Female 342.8
Sample B Female 338.8
Sample C Male 348.7
Sample D Male 332.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.9
Mouse sample Sample description nTPM
Retina
nTPM: 170.9
Samples: 4

Max nTPM: 207.4
Min nTPM: 137.1
Sample A Male 192.3
Sample B Male 146.9
Sample C Female 137.1
Sample D Female 207.4

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