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EXD2
HPA
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  • EXD2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

EXD2
Synonyms C14orf114, EXDL2, FLJ10738
Gene descriptioni

Full gene name according to HGNC.

Exonuclease 3'-5' domain containing 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q24.1
Chromosome location (bp) 69191498 - 69244020
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000081177 (version 109)
Entrez gene 55218
HGNC HGNC:20217
UniProt Q9NVH0 (UniProt - Evidence at protein level)
neXtProt NX_Q9NVH0
GeneCards EXD2
Antibodypedia EXD2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Exonuclease that has both 3'-5' exoribonuclease and exodeoxyribonuclease activities, depending on the divalent metal cation used as cofactor 1, 2. In presence of Mg(2+), only shows 3'-5' exoribonuclease activity, while it shows both exoribonuclease and exodeoxyribonuclease activities in presence of Mn(2+) 3, 4. Acts as an exoribonuclease in mitochondrion, possibly by regulating ATP production and mitochondrial translation 5. Also involved in the response to DNA damage 6, 7. Acts as 3'- 5' exodeoxyribonuclease for double-strand breaks resection and efficient homologous recombination 8, 9. Plays a key role in controlling the initial steps of chromosomal break repair, it is recruited to chromatin in a damage-dependent manner and functionally interacts with the MRN complex to accelerate resection through its 3'-5' exonuclease activity, which efficiently processes double-stranded DNA substrates containing nicks 10. Also involved in response to replicative stress: recruited to stalled forks and is required to stabilize and restart stalled replication forks by restraining excessive fork regression, thereby suppressing their degradation 11.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Exonuclease, Hydrolase, Nuclease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA repair
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Magnesium, Manganese, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables 3'-5' exonuclease activity; metal ion binding activity; and protein homodimerization activity. Involved in nucleic acid metabolic process. Located in intermediate filament cytoskeleton; mitochondrial outer membrane; and site of DNA damage. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
EXD2-201
ENSP00000313140
ENST00000312994
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
621 aa
70.4 kDa
No 1
EXD2-202
ENSP00000386915
ENST00000409014
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
496 aa
56.3 kDa
No 0
EXD2-203
ENSP00000387331
ENST00000409018
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
621 aa
70.4 kDa
No 1
EXD2-204
ENSP00000386839
ENST00000409242
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
496 aa
56.3 kDa
No 0
EXD2-205
ENSP00000386762
ENST00000409675
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
496 aa
56.3 kDa
No 0
EXD2-206
ENSP00000386632
ENST00000409949
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
496 aa
56.3 kDa
No 0
EXD2-207
ENSP00000409089
ENST00000413191
C9JLF4
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0008408 [3'-5' exonuclease activity]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
114 aa
12.4 kDa
No 0
EXD2-214
ENSP00000510642
ENST00000685843
Q9NVH0
[Direct mapping] Exonuclease 3'-5' domain-containing protein 2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0000287 [magnesium ion binding]
GO:0000724 [double-strand break repair via homologous recombination]
GO:0000729 [DNA double-strand break processing]
GO:0003676 [nucleic acid binding]
GO:0004518 [nuclease activity]
GO:0004527 [exonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0005759 [mitochondrial matrix]
GO:0006139 [nucleobase-containing compound metabolic process]
GO:0006281 [DNA repair]
GO:0006302 [double-strand break repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008296 [3'-5'-exodeoxyribonuclease activity]
GO:0008310 [single-stranded DNA 3'-5' exodeoxyribonuclease activity]
GO:0008408 [3'-5' exonuclease activity]
GO:0008852 [exodeoxyribonuclease I activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0031297 [replication fork processing]
GO:0042803 [protein homodimerization activity]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:0090734 [site of DNA damage]
Show all
621 aa
70.4 kDa
No 1

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