MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.1 nTPM
HPA Brain:284.5 nTPM
GTEx:108.1 nTPM
FANTOM5:219.7 Scaled Tags Per Million
Pig:107.3 nTPM
Mouse:145.6 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 284.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 226.8
1827 Male, age 72, unknown 270.1
2666 Male, age 74, left hemisphere 267.8
2828 Female, age 72, unknown 260.2
2586 Male, age 75, left hemisphere 250.8
1870 Female, age 42, unknown 212.2
1830 Male, age 51, unknown 210.2
1833 Male, age 53, unknown 210.0
2019 Male, age 18, unknown 209.1
2411 Female, age 72, unknown 204.7
2219 Male, age 76, both hemispheres 172.8
Dorsal raphe nucleus
nTPM: 230.2
2047 Male, age 72, unknown 259.4
1828 Male, age 53, unknown 245.4
2298 Female, age 72, unknown 224.1
2016 Female, age 72, unknown 216.9
2750 Male, age 76, both hemispheres 205.1
Inferior colliculus
nTPM: 199.3
1848 Female, age 42, unknown 211.9
1890 Male, age 53, unknown 200.2
2849 Male, age 72, unknown 199.6
2097 Female, age 72, unknown 185.7
Median raphe nucleus
nTPM: 237.3
2220 Male, age 76, midline 237.3
Periaquaductal grey, anterior
nTPM: 274.8
1947 Male, age 18, unknown 279.3
1795 Male, age 51, unknown 272.8
2502 Female, age 75, unknown 272.4
Periaquaductal grey, dorsal
nTPM: 221.1
1831 Male, age 72, unknown 253.9
2850 Male, age 76, both hemispheres 238.5
1840 Male, age 53, unknown 212.8
2464 Female, age 72, unknown 179.2
Periaquaductal grey, lateral
nTPM: 239.5
2272 Male, age 74, both hemispheres 261.9
2053 Male, age 18, unknown 237.3
2140 Male, age 76, both hemispheres 219.4
Pretectal area
nTPM: 262.7
2273 Male, age 74, both hemispheres 346.3
2407 Male, age 75, both hemispheres 306.8
2667 Female, age 75, unknown 302.8
1816 Male, age 51, unknown 286.7
1944 Female, age 72, unknown 269.3
2007 Male, age 72, unknown 248.8
1815 Male, age 53, unknown 245.2
1817 Female, age 42, unknown 240.4
2825 Male, age 18, unknown 239.4
2224 Female, age 72, unknown 203.2
2316 Male, age 76, right hemisphere 200.9
Red nucleus
nTPM: 196.3
2584 Male, age 75, left hemisphere 228.8
2725 Female, age 75, unknown 224.0
1821 Female, age 72, unknown 218.1
2588 Male, age 74, left hemisphere 204.8
2785 Male, age 18, unknown 204.6
1954 Female, age 42, unknown 190.0
1865 Male, age 51, unknown 189.7
2503 Female, age 72, unknown 188.1
2769 Male, age 72, unknown 183.3
2227 Male, age 72, unknown 182.4
1904 Male, age 53, unknown 175.6
2823 Male, age 76, right hemisphere 166.2
Substantia nigra
nTPM: 284.5
1916 Female, age 42, unknown 368.8
1941 Male, age 53, unknown 329.4
2665 Male, age 74, both hemispheres 317.5
1851 Male, age 51, unknown 298.8
2699 Male, age 18, unknown 289.7
1889 Female, age 72, unknown 253.5
2583 Male, age 75, right hemisphere 252.7
2590 Female, age 75, unknown 249.7
2409 Female, age 72, unknown 244.5
2241 Male, age 72, unknown 240.0
Superior colliculus
nTPM: 232.7
2664 Male, age 75, both hemispheres 317.8
2587 Male, age 74, left hemisphere 277.4
1796 Male, age 53, unknown 255.2
2261 Male, age 18, unknown 245.1
2087 Female, age 72, unknown 238.9
1839 Male, age 51, unknown 228.4
1995 Male, age 72, unknown 202.6
1913 Female, age 42, unknown 198.4
2668 Female, age 75, unknown 194.6
1895 Male, age 76, right hemisphere 168.4
Ventral tegmental area
nTPM: 245.7
1915 Female, age 42, unknown 278.6
2410 Female, age 72, unknown 275.7
2218 Male, age 76, both hemispheres 238.5
1942 Male, age 51, unknown 231.8
2021 Male, age 53, unknown 226.1
2223 Female, age 72, unknown 223.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.1
Samples: 139

Max nTPM: 192.6
Min nTPM: 71.5
Std nTPM: 22.4
Median nTPM: 101.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 192.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 178.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 169.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 159.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 159.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 158.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 155.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 153.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 150.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 149.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 144.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 219.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.7
FF:10158-103A5 76 years, female 219.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 107.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.7
Samples: 4

Max nTPM: 107.3
Min nTPM: 75.1
Sample A Female 107.3
Sample B Female 85.6
Sample C Male 106.6
Sample D Male 75.1
Midbrain
nTPM: 95.3
Samples: 4

Max nTPM: 110.5
Min nTPM: 73.6
Sample A Female 106.8
Sample B Female 73.6
Sample C Male 110.5
Sample D Male 90.4
Periaqueductal gray
nTPM: 84.9
Samples: 3

Max nTPM: 95.6
Min nTPM: 78.6
Sample B Female 78.6
Sample C Male 95.6
Sample D Male 80.6
Superior colliculi
nTPM: 107.3
Samples: 4

Max nTPM: 111.9
Min nTPM: 102.7
Sample A Female 110.0
Sample B Female 111.9
Sample C Male 102.7
Sample D Male 104.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 145.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 145.6
Samples: 4

Max nTPM: 156.4
Min nTPM: 136.6
Sample A Male 136.6
Sample B Male 156.4
Sample C Female 141.2
Sample D Female 148.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
68924787 Antisense, RP_050309_01_A05, Mouse strain C57BL/6J (56 days, male) 14.8

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