MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:81.6 nTPM
GTEx:9.5 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:96.1 nTPM
Mouse:54.5 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.4
2219 Male, age 76, both hemispheres 78.7
2666 Male, age 74, left hemisphere 72.0
2586 Male, age 75, left hemisphere 71.7
1827 Male, age 72, unknown 70.0
2828 Female, age 72, unknown 59.9
2411 Female, age 72, unknown 58.8
1833 Male, age 53, unknown 58.6
1830 Male, age 51, unknown 53.2
1870 Female, age 42, unknown 51.2
2019 Male, age 18, unknown 50.4
Dorsal raphe nucleus
nTPM: 59.5
2047 Male, age 72, unknown 64.9
2750 Male, age 76, both hemispheres 63.1
2298 Female, age 72, unknown 58.0
1828 Male, age 53, unknown 57.1
2016 Female, age 72, unknown 54.5
Inferior colliculus
nTPM: 62.2
2849 Male, age 72, unknown 66.5
1848 Female, age 42, unknown 65.3
2097 Female, age 72, unknown 60.6
1890 Male, age 53, unknown 56.2
Median raphe nucleus
nTPM: 81.6
2220 Male, age 76, midline 81.6
Periaquaductal grey, anterior
nTPM: 69.4
1947 Male, age 18, unknown 74.7
1795 Male, age 51, unknown 69.8
2502 Female, age 75, unknown 63.8
Periaquaductal grey, dorsal
nTPM: 58.4
2850 Male, age 76, both hemispheres 61.9
1831 Male, age 72, unknown 58.7
1840 Male, age 53, unknown 57.2
2464 Female, age 72, unknown 56.0
Periaquaductal grey, lateral
nTPM: 55.3
2272 Male, age 74, both hemispheres 56.0
2140 Male, age 76, both hemispheres 55.1
2053 Male, age 18, unknown 54.6
Pretectal area
nTPM: 61.6
1816 Male, age 51, unknown 74.2
1817 Female, age 42, unknown 71.6
2007 Male, age 72, unknown 68.6
1815 Male, age 53, unknown 68.0
2667 Female, age 75, unknown 67.0
2825 Male, age 18, unknown 64.5
1944 Female, age 72, unknown 61.6
2224 Female, age 72, unknown 60.6
2407 Male, age 75, both hemispheres 48.3
2316 Male, age 76, right hemisphere 48.0
2273 Male, age 74, both hemispheres 44.8
Red nucleus
nTPM: 53.9
2588 Male, age 74, left hemisphere 64.5
2503 Female, age 72, unknown 60.4
2584 Male, age 75, left hemisphere 60.0
2725 Female, age 75, unknown 58.2
1821 Female, age 72, unknown 57.7
1954 Female, age 42, unknown 53.3
2227 Male, age 72, unknown 50.9
2785 Male, age 18, unknown 50.8
1865 Male, age 51, unknown 49.3
2769 Male, age 72, unknown 47.7
1904 Male, age 53, unknown 47.3
2823 Male, age 76, right hemisphere 47.0
Substantia nigra
nTPM: 66.7
1916 Female, age 42, unknown 92.3
1941 Male, age 53, unknown 74.7
2665 Male, age 74, both hemispheres 74.4
2241 Male, age 72, unknown 69.4
1851 Male, age 51, unknown 67.4
2699 Male, age 18, unknown 66.4
1889 Female, age 72, unknown 65.3
2590 Female, age 75, unknown 60.0
2583 Male, age 75, right hemisphere 57.8
2409 Female, age 72, unknown 39.2
Superior colliculus
nTPM: 59.5
2664 Male, age 75, both hemispheres 71.2
1796 Male, age 53, unknown 68.0
2261 Male, age 18, unknown 66.2
2087 Female, age 72, unknown 64.7
1839 Male, age 51, unknown 63.3
1895 Male, age 76, right hemisphere 58.5
2668 Female, age 75, unknown 58.3
2587 Male, age 74, left hemisphere 52.9
1913 Female, age 42, unknown 48.3
1995 Male, age 72, unknown 43.5
Ventral tegmental area
nTPM: 65.8
2218 Male, age 76, both hemispheres 84.4
1915 Female, age 42, unknown 67.1
2410 Female, age 72, unknown 63.2
2021 Male, age 53, unknown 61.7
1942 Male, age 51, unknown 60.4
2223 Female, age 72, unknown 57.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 24.8
Min nTPM: 5.2
Std nTPM: 3.4
Median nTPM: 8.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 15.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 15.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 15.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.1
Samples: 4

Max nTPM: 124.1
Min nTPM: 67.5
Sample A Female 111.8
Sample B Female 81.1
Sample C Male 124.1
Sample D Male 67.5
Midbrain
nTPM: 95.5
Samples: 4

Max nTPM: 127.1
Min nTPM: 69.9
Sample A Female 69.9
Sample B Female 86.7
Sample C Male 127.1
Sample D Male 98.4
Periaqueductal gray
nTPM: 87.2
Samples: 3

Max nTPM: 100.9
Min nTPM: 79.5
Sample B Female 81.2
Sample C Male 100.9
Sample D Male 79.5
Superior colliculi
nTPM: 87.4
Samples: 4

Max nTPM: 105.5
Min nTPM: 65.8
Sample A Female 86.7
Sample B Female 65.8
Sample C Male 105.5
Sample D Male 91.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 58.5
Min nTPM: 44.8
Sample A Male 44.8
Sample B Male 56.9
Sample C Female 58.5
Sample D Female 57.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
68269508 Antisense, RP_041129_01_F12, Mouse strain C57BL/6J (56 days, male) 7.6

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