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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:183.5 nTPM
HPA Brain:145.0 nTPM
GTEx:183.5 nTPM
FANTOM5:320.2 Scaled Tags Per Million
Pig:292.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 124.9
2048 Male, age 55, midline 146.9
1981 Female, age 72, midline 146.8
2816 Male, age 47, midline 126.2
2194 Female, age 79, both hemispheres 111.1
2565 Male, age 75, midline 93.7
Cervical spinal cord, dorsal horn
nTPM: 145.0
2296 Male, age 66, both hemispheres 246.8
2173 Female, age 72, unknown 195.4
2069 Male, age 47, both hemispheres 140.3
1877 Male, age 55, unknown 111.6
2721 Male, age 90, both hemispheres 89.1
2297 Male, age 75, both hemispheres 86.6
Cervical spinal cord, ventral horn
nTPM: 124.0
2098 Female, age 72, unknown 169.0
2068 Male, age 55, unknown 124.8
2820 Female, age 79, both hemispheres 123.1
2295 Male, age 66, both hemispheres 109.9
2809 Male, age 90, both hemispheres 109.9
2480 Male, age 75, both hemispheres 107.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 183.5
Samples: 159

Max nTPM: 362.4
Min nTPM: 59.1
Std nTPM: 64.3
Median nTPM: 178.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 362.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 334.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 329.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 296.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 288.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 287.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 285.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 285.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 284.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 284.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 283.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 282.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 280.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 280.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 279.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 277.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 276.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 276.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 274.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 274.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 269.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 269.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 269.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 268.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 259.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 258.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 258.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 258.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 255.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 250.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 250.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 249.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 245.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 244.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 242.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 241.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 239.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 237.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 236.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 232.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 230.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 229.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 227.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 220.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 217.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 217.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 217.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 217.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 217.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 209.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 207.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 205.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 205.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 202.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 201.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 201.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 200.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 199.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 199.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 198.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 197.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 196.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 193.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 192.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 191.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 191.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 190.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 190.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 188.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 187.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 186.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 184.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 182.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 181.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 179.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 178.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 178.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 175.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 175.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 175.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 174.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 174.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 173.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 173.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 172.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 165.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 163.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 162.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 160.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 160.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 160.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 159.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 158.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 158.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 157.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 157.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 155.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 149.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 148.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 147.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 144.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 144.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 143.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 139.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 137.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 137.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 135.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 134.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 130.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 130.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 129.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 127.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 125.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 125.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 122.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 122.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 119.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 116.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 115.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 114.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 113.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 113.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 110.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 109.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 101.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 97.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 92.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 91.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 87.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 76.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 74.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 71.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 67.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 65.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 61.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

320.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 320.2
FF:10159-103A6 76 years, female 356.1
FF:10181-103D1 60 years, female 284.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 250.0
Samples: 4

Max nTPM: 294.9
Min nTPM: 221.5
Sample A Female 221.5
Sample B Female 294.9
Sample C Male 255.4
Sample D Male 228.1
Ventral spinal cord
nTPM: 292.2
Samples: 4

Max nTPM: 378.6
Min nTPM: 232.2
Sample A Female 278.0
Sample B Female 280.1
Sample C Male 232.2
Sample D Male 378.6

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