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TDRD3
HPA
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  • SUMMARY

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  • TDRD3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TDRD3
Synonyms FLJ21007
Gene descriptioni

Full gene name according to HGNC.

Tudor domain containing 3
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 13
Cytoband q21.2
Chromosome location (bp) 60396457 - 60573878
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000083544 (version 109)
Entrez gene 81550
HGNC HGNC:20612
UniProt Q9H7E2 (UniProt - Evidence at protein level)
neXtProt NX_Q9H7E2
GeneCards TDRD3
Antibodypedia TDRD3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins 1. Plays a role in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci 2. In cytoplasm, acts as an antiviral factor that participates in the assembly of stress granules together with G3BP1 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables chromatin binding activity; methylated histone binding activity; and transcription coactivator activity. Predicted to be involved in chromatin organization and positive regulation of transcription, DNA-templated. Located in Golgi apparatus; cytosol; and nucleoplasm. Colocalizes with exon-exon junction complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TDRD3-201
ENSP00000196169
ENST00000196169
Q9H7E2
[Direct mapping] Tudor domain-containing protein 3
Show all
A0A024QZE0
[Target identity:100%; Query identity:100%] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0035064 [methylated histone binding]
GO:0035145 [exon-exon junction complex]
GO:0045893 [positive regulation of DNA-templated transcription]
Show all
651 aa
73.2 kDa
No 0
TDRD3-202
ENSP00000367113
ENST00000377881
Q9H7E2
[Direct mapping] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006265 [DNA topological change]
GO:0006325 [chromatin organization]
GO:0035064 [methylated histone binding]
GO:0035145 [exon-exon junction complex]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0140225 [DNA topoisomerase III-beta-TDRD3 complex]
Show all
744 aa
83.1 kDa
No 0
TDRD3-203
ENSP00000367114
ENST00000377882
B1AMN9
[Direct mapping] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
129 aa
14.3 kDa
No 0
TDRD3-204
ENSP00000367126
ENST00000377894
Q9H7E2
[Direct mapping] Tudor domain-containing protein 3
Show all
A0A024QZE0
[Target identity:100%; Query identity:100%] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0035064 [methylated histone binding]
GO:0035145 [exon-exon junction complex]
GO:0045893 [positive regulation of DNA-templated transcription]
Show all
651 aa
73.2 kDa
No 0
TDRD3-208
ENSP00000477993
ENST00000621840
Q9H7E2
[Direct mapping] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0035064 [methylated histone binding]
GO:0035145 [exon-exon junction complex]
GO:0045893 [positive regulation of DNA-templated transcription]
Show all
650 aa
73.1 kDa
No 0
TDRD3-209
ENSP00000498191
ENST00000648252
Q9H7E2
[Direct mapping] Tudor domain-containing protein 3
Show all
A0A024QZE0
[Target identity:100%; Query identity:100%] Tudor domain-containing protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0035064 [methylated histone binding]
GO:0035145 [exon-exon junction complex]
GO:0045893 [positive regulation of DNA-templated transcription]
Show all
651 aa
73.2 kDa
No 0

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