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  • APLP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:157.6 nTPM
FANTOM5:281.2 Scaled Tags Per Million
Pig:128.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039319
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 157.6
Samples: 246

Max nTPM: 224.2
Min nTPM: 87.5
Std nTPM: 22.1
Median nTPM: 158.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 224.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 221.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 216.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 213.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 210.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 208.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 208.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 204.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 200.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 199.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 198.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 196.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 195.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 194.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 193.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 193.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 190.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 189.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 188.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 187.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 186.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 186.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 186.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 186.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 184.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 184.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 183.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 182.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 182.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 182.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 181.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 180.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 180.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 180.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 180.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 178.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 177.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 177.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 176.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 175.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 175.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 175.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 174.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 174.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 173.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 173.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 173.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 173.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 172.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 172.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 171.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 171.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 171.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 171.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 171.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 171.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 171.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 171.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 171.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 170.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 170.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 170.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 170.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 169.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 169.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 169.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 169.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 169.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 168.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 168.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 168.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 168.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 167.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 167.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 167.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 167.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 167.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 167.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 167.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 167.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 166.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 166.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 166.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 166.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 165.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 165.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 164.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 164.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 164.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 164.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 163.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 163.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 163.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 163.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 163.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 163.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 163.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 162.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 162.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 162.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 162.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 162.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 162.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 161.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 161.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 161.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 161.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 161.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 161.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 160.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 159.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 159.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 159.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 159.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 159.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 158.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 158.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 158.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 158.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 158.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 158.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 158.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 158.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 157.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 157.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 157.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 156.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 156.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 156.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 155.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 155.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 155.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 154.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 154.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 154.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 154.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 154.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 154.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 154.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 153.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 153.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 153.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 153.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 153.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 153.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 153.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 152.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 152.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 152.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 152.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 152.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 151.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 151.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 151.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 151.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 151.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 150.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 150.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 150.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 150.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 149.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 149.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 149.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 149.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 149.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 149.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 148.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 148.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 147.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 147.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 147.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 147.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 146.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 146.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 146.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 145.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 145.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 145.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 144.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 144.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 144.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 143.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 143.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 142.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 142.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 142.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 141.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 140.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 140.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 140.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 139.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 139.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 139.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 139.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 139.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 138.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 138.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 136.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 136.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 135.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 135.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 135.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 135.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 135.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 134.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 134.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 134.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 133.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 133.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 132.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 132.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 131.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 131.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 131.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 131.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 130.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 130.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 129.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 129.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 128.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 126.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 125.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 122.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 120.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 119.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 119.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 119.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 118.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 116.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 114.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 112.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 112.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 106.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 96.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 90.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 281.2
FF:10164-103B2 76 years, female 281.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
Pig sample Sample description nTPM
Caudate
nTPM: 128.4
Samples: 4

Max nTPM: 148.8
Min nTPM: 110.2
Sample A Female 110.2
Sample B Female 125.7
Sample C Male 148.8
Sample D Male 128.7

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