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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:524.4 nTPM
GTEx:524.4 nTPM
FANTOM5:915.2 Scaled Tags Per Million
Pig:335.2 nTPM
Mouse:694.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

524.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 524.4
Samples: 105

Max nTPM: 704.3
Min nTPM: 310.3
Std nTPM: 67.1
Median nTPM:
237_1 82 years, male 704.3
35_1 74 years, female 683.6
6_1 73 years, female 678.8
321_1 62 years, female 651.6
352_1 62 years, male 648.0
316_1 62 years, male 637.1
350_1 84 years, female 628.0
386_1 76 years, male 625.3
375_1 74 years, female 619.9
355_1 70 years, female 619.1
322_1 76 years, male 615.5
126_1 63 years, male 604.6
218_1 71 years, female 597.3
324_1 76 years, male 597.2
153_1 70 years, female 592.5
526_1 61 years, male 587.7
347_1 72 years, male 587.0
142_1 61 years, female 585.7
319_1 81 years, male 584.9
377_1 82 years, female 584.6
17_1 71 years, male 581.0
81_1 67 years, male 578.2
43_1 64 years, female 577.1
2_1 77 years, female 574.2
9_1 66 years, female 567.9
115_1 83 years, male 566.6
229_1 69 years, female 566.4
396_1 62 years, male 565.3
246_1 77 years, male 562.2
318_1 68 years, male 559.5
99_1 64 years, male 558.7
376_1 75 years, female 558.5
149_1 88 years, male 556.8
139_1 64 years, female 552.7
18_1 88 years, male 548.0
217_1 76 years, male 547.7
405_1 91 years, male 546.1
389_1 86 years, female 543.5
120_1 70 years, female 542.4
42_1 85 years, male 540.9
32_1 67 years, male 540.5
348_1 84 years, male 540.3
379_1 60 years, male 538.9
447_1 81 years, male 538.5
518_1 75 years, female 536.8
243_1 75 years, male 535.9
353_1 82 years, female 534.1
177_1 74 years, male 532.2
415_1 77 years, female 530.2
286_1 68 years, female 529.9
251_1 78 years, male 529.7
117_1 61 years, male 529.5
468_1 89 years, male 527.2
311_1 78 years, male 526.4
466_1 57 years, female 524.6
291_1 76 years, male 524.2
172_1 72 years, female 524.0
404_1 82 years, female 518.3
292_1 71 years, male 517.2
320_1 89 years, female 514.8
189_1 76 years, male 513.5
315_1 62 years, female 513.4
499_1 55 years, female 503.2
335_1 73 years, female 502.9
349_1 83 years, male 500.7
265_1 87 years, male 497.9
354_1 81 years, female 497.8
414_1 84 years, female 493.3
384_1 83 years, male 493.0
264_1 73 years, female 491.7
137_1 83 years, male 488.7
425_1 59 years, female 486.8
173_1 67 years, male 486.0
4_1 88 years, female 484.8
163_1 78 years, male 483.1
506_1 65 years, male 481.0
109_1 81 years, female 478.7
266_1 85 years, male 477.7
254_1 77 years, female 475.1
406_1 79 years, male 474.4
162_1 79 years, female 473.8
480_1 63 years, male 470.9
119_1 70 years, female 469.1
293_1 68 years, female 469.0
313_1 79 years, female 468.7
356_1 87 years, female 468.6
501_1 88 years, male 466.7
517_1 88 years, male 465.8
495_1 57 years, female 465.0
503_1 68 years, male 458.0
413_1 59 years, female 457.8
490_1 67 years, female 455.6
145_1 84 years, male 454.9
317_1 60 years, male 445.0
491_1 89 years, female 443.2
307_1 66 years, female 441.1
89_1 63 years, male 437.3
41_1 94 years, female 432.4
394_1 75 years, female 424.9
295_1 61 years, female 422.9
351_1 91 years, male 420.9
452_1 88 years, female 411.9
288_1 66 years, female 397.5
314_1 67 years, male 391.7
308_1 70 years, female 310.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

915.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 915.2
FF:10030-101E3 24-65 years, mixed 915.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.2
Pig sample Sample description nTPM
Retina
nTPM: 335.2
Samples: 4

Max nTPM: 359.7
Min nTPM: 298.7
Sample A Female 345.9
Sample B Female 359.7
Sample C Male 336.6
Sample D Male 298.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

694.0
Mouse sample Sample description nTPM
Retina
nTPM: 694.0
Samples: 4

Max nTPM: 863.6
Min nTPM: 525.5
Sample A Male 863.6
Sample B Male 610.3
Sample C Female 525.5
Sample D Female 776.7

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