MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:30.9 nTPM
GTEx:7.6 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:34.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
2219 Male, age 76, both hemispheres 24.4
2411 Female, age 72, unknown 23.2
2586 Male, age 75, left hemisphere 22.9
1830 Male, age 51, unknown 22.6
1833 Male, age 53, unknown 22.1
1870 Female, age 42, unknown 20.5
2666 Male, age 74, left hemisphere 18.9
2019 Male, age 18, unknown 17.8
1827 Male, age 72, unknown 15.4
2828 Female, age 72, unknown 12.0
Dorsal raphe nucleus
nTPM: 17.9
2750 Male, age 76, both hemispheres 21.1
2047 Male, age 72, unknown 20.7
2016 Female, age 72, unknown 17.1
2298 Female, age 72, unknown 16.5
1828 Male, age 53, unknown 14.3
Inferior colliculus
nTPM: 24.3
2097 Female, age 72, unknown 38.7
2849 Male, age 72, unknown 21.6
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 17.6
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 13.0
2502 Female, age 75, unknown 17.2
1795 Male, age 51, unknown 11.8
1947 Male, age 18, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 14.6
2464 Female, age 72, unknown 17.0
1831 Male, age 72, unknown 15.6
2850 Male, age 76, both hemispheres 13.0
1840 Male, age 53, unknown 12.8
Periaquaductal grey, lateral
nTPM: 12.6
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 14.1
2272 Male, age 74, both hemispheres 8.8
Pretectal area
nTPM: 13.9
2825 Male, age 18, unknown 23.2
1815 Male, age 53, unknown 21.1
2316 Male, age 76, right hemisphere 19.4
1817 Female, age 42, unknown 17.0
2407 Male, age 75, both hemispheres 15.6
2007 Male, age 72, unknown 13.4
2224 Female, age 72, unknown 11.9
1816 Male, age 51, unknown 9.1
1944 Female, age 72, unknown 8.0
2273 Male, age 74, both hemispheres 7.5
2667 Female, age 75, unknown 6.5
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 40.2
1904 Male, age 53, unknown 36.2
1865 Male, age 51, unknown 34.1
1954 Female, age 42, unknown 32.5
2503 Female, age 72, unknown 31.6
2769 Male, age 72, unknown 31.6
2823 Male, age 76, right hemisphere 30.4
2588 Male, age 74, left hemisphere 29.8
2227 Male, age 72, unknown 29.2
2725 Female, age 75, unknown 27.8
2584 Male, age 75, left hemisphere 25.4
2785 Male, age 18, unknown 21.7
Substantia nigra
nTPM: 18.9
1941 Male, age 53, unknown 28.0
2590 Female, age 75, unknown 25.9
2241 Male, age 72, unknown 22.2
2699 Male, age 18, unknown 22.0
1851 Male, age 51, unknown 17.3
1889 Female, age 72, unknown 17.0
2583 Male, age 75, right hemisphere 15.7
1916 Female, age 42, unknown 15.3
2409 Female, age 72, unknown 14.0
2665 Male, age 74, both hemispheres 11.8
Superior colliculus
nTPM: 16.0
1895 Male, age 76, right hemisphere 21.0
1839 Male, age 51, unknown 19.1
2587 Male, age 74, left hemisphere 19.0
1913 Female, age 42, unknown 17.8
2668 Female, age 75, unknown 17.1
2664 Male, age 75, both hemispheres 15.2
1995 Male, age 72, unknown 13.5
1796 Male, age 53, unknown 13.1
2087 Female, age 72, unknown 12.5
2261 Male, age 18, unknown 11.7
Ventral tegmental area
nTPM: 16.6
2410 Female, age 72, unknown 21.7
2218 Male, age 76, both hemispheres 18.8
1942 Male, age 51, unknown 16.3
2223 Female, age 72, unknown 16.2
1915 Female, age 42, unknown 15.9
2021 Male, age 53, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 28.3
Min nTPM: 0.0
Std nTPM: 4.8
Median nTPM: 6.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 21.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 19.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 19.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 17.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.2
Sample A Female 5.4
Sample B Female 5.6
Sample C Male 7.1
Sample D Male 5.2
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 14.6
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 6.2
Sample C Male 14.6
Sample D Male 10.3
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.3
Min nTPM: 4.9
Sample B Female 5.1
Sample C Male 4.9
Sample D Male 5.3
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 4.3
Sample A Female 6.2
Sample B Female 4.3
Sample C Male 9.8
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.5
Samples: 4

Max nTPM: 36.3
Min nTPM: 32.6
Sample A Male 34.4
Sample B Male 34.8
Sample C Female 32.6
Sample D Female 36.3

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