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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:222.9 nTPM
HPA Brain:235.1 nTPM
GTEx:222.9 nTPM
FANTOM5:209.5 Scaled Tags Per Million
Pig:36.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.1
Sample id Sample description nTPM
Amygdala
nTPM: 235.1
2695 Female, age 67, right hemisphere 271.3
2514 Male, age 75, right hemisphere 245.3
1987 Female, age 91, left hemisphere 236.5
2814 Male, age 76, right hemisphere 232.2
2517 Female, age 94, left hemisphere 190.2
Basal amygdala
nTPM: 198.7
2609 Male, age 75, right hemisphere 257.0
2110 Male, age 80, left hemisphere 229.0
2243 Female, age 91, right hemisphere 209.8
1955 Male, age 76, both hemispheres 209.7
2685 Female, age 94, left hemisphere 160.7
2827 Female, age 67, right hemisphere 125.8
Central amygdala
nTPM: 218.6
2515 Male, age 75, right hemisphere 287.6
1905 Male, age 76, both hemispheres 226.4
2239 Male, age 80, left hemisphere 202.9
2826 Female, age 94, left hemisphere 196.0
2701 Female, age 91, right hemisphere 180.3
Corticomedial amygdala
nTPM: 213.6
2428 Male, age 75, right hemisphere 296.1
2829 Male, age 80, left hemisphere 235.3
2242 Female, age 91, right hemisphere 232.4
2429 Female, age 94, left hemisphere 209.3
2240 Male, age 76, both hemispheres 194.9
2535 Female, age 67, right hemisphere 113.8
Lateral amygdala
nTPM: 199.0
2516 Male, age 75, right hemisphere 260.5
1883 Male, age 76, both hemispheres 233.6
2830 Female, age 67, right hemisphere 182.4
2534 Female, age 94, left hemisphere 177.9
2255 Female, age 91, right hemisphere 170.2
2256 Male, age 80, left hemisphere 169.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 222.9
Samples: 152

Max nTPM: 1448.7
Min nTPM: 81.5
Std nTPM: 129.3
Median nTPM: 192.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1448.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 693.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 507.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 500.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 467.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 425.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 410.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 406.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 401.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 351.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 328.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 317.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 312.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 312.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 310.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 301.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 289.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 288.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 286.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 282.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 282.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 280.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 278.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 278.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 277.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 272.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 270.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 268.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 263.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 263.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 262.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 262.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 262.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 255.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 255.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 253.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 245.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 241.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 239.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 238.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 238.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 237.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 236.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 235.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 234.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 231.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 230.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 229.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 228.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 225.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 223.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 218.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 216.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 216.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 215.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 212.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 211.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 210.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 210.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 208.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 205.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 205.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 205.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 204.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 204.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 204.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 201.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 200.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 198.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 197.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 197.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 197.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 194.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 192.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 192.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 192.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 191.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 191.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 190.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 190.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 189.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 189.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 188.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 187.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 186.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 186.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 186.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 185.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 182.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 181.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 181.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 181.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 181.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 180.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 180.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 180.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 179.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 177.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 175.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 175.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 174.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 173.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 172.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 171.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 171.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 170.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 168.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 167.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 163.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 163.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 161.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 160.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 160.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 160.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 160.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 159.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 157.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 156.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 154.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 152.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 150.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 148.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 147.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 146.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 146.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 145.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 141.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 139.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 138.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 133.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 130.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 121.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 121.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 120.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 119.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 115.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 111.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 209.5
FF:10151-102I7 76 years, female 209.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.3
Pig sample Sample description nTPM
Amygdala
nTPM: 36.4
Samples: 4

Max nTPM: 45.2
Min nTPM: 30.6
Sample A Female 45.2
Sample B Female 33.4
Sample C Male 30.6
Sample D Male 36.2

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