MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA Brain:16.6 nTPM
GTEx:39.4 nTPM
FANTOM5:49.1 Scaled Tags Per Million
Pig:10.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
1830 Male, age 51, unknown 14.9
2828 Female, age 72, unknown 13.6
1833 Male, age 53, unknown 13.0
2411 Female, age 72, unknown 12.6
1827 Male, age 72, unknown 12.5
2019 Male, age 18, unknown 11.9
2219 Male, age 76, both hemispheres 11.4
1870 Female, age 42, unknown 10.3
2666 Male, age 74, left hemisphere 10.2
2586 Male, age 75, left hemisphere 8.7
Dorsal raphe nucleus
nTPM: 13.6
2047 Male, age 72, unknown 14.6
2750 Male, age 76, both hemispheres 14.5
2016 Female, age 72, unknown 13.7
1828 Male, age 53, unknown 13.0
2298 Female, age 72, unknown 12.2
Inferior colliculus
nTPM: 12.8
2849 Male, age 72, unknown 13.6
1848 Female, age 42, unknown 12.8
1890 Male, age 53, unknown 12.4
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 16.6
2220 Male, age 76, midline 16.6
Periaquaductal grey, anterior
nTPM: 13.4
1947 Male, age 18, unknown 15.2
2502 Female, age 75, unknown 13.1
1795 Male, age 51, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 14.1
2850 Male, age 76, both hemispheres 15.4
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 13.5
1840 Male, age 53, unknown 12.2
Periaquaductal grey, lateral
nTPM: 14.8
2140 Male, age 76, both hemispheres 15.7
2272 Male, age 74, both hemispheres 14.5
2053 Male, age 18, unknown 14.4
Pretectal area
nTPM: 14.2
2224 Female, age 72, unknown 16.2
2273 Male, age 74, both hemispheres 15.9
1815 Male, age 53, unknown 15.0
2667 Female, age 75, unknown 15.0
1944 Female, age 72, unknown 14.9
2407 Male, age 75, both hemispheres 14.2
1816 Male, age 51, unknown 13.9
1817 Female, age 42, unknown 13.2
2825 Male, age 18, unknown 13.2
2007 Male, age 72, unknown 12.8
2316 Male, age 76, right hemisphere 11.6
Red nucleus
nTPM: 12.6
1865 Male, age 51, unknown 14.1
2823 Male, age 76, right hemisphere 13.7
2785 Male, age 18, unknown 13.5
2584 Male, age 75, left hemisphere 13.1
1821 Female, age 72, unknown 13.0
1954 Female, age 42, unknown 13.0
1904 Male, age 53, unknown 12.4
2503 Female, age 72, unknown 12.3
2588 Male, age 74, left hemisphere 12.3
2725 Female, age 75, unknown 11.5
2227 Male, age 72, unknown 11.3
2769 Male, age 72, unknown 11.3
Substantia nigra
nTPM: 13.6
1941 Male, age 53, unknown 16.1
1916 Female, age 42, unknown 15.5
2590 Female, age 75, unknown 15.5
2409 Female, age 72, unknown 15.3
2241 Male, age 72, unknown 14.1
2699 Male, age 18, unknown 13.7
1889 Female, age 72, unknown 12.9
1851 Male, age 51, unknown 12.0
2583 Male, age 75, right hemisphere 10.9
2665 Male, age 74, both hemispheres 10.1
Superior colliculus
nTPM: 12.4
1895 Male, age 76, right hemisphere 13.8
1913 Female, age 42, unknown 13.3
2587 Male, age 74, left hemisphere 13.3
2664 Male, age 75, both hemispheres 13.2
2087 Female, age 72, unknown 13.1
1995 Male, age 72, unknown 12.4
1796 Male, age 53, unknown 12.1
2668 Female, age 75, unknown 11.2
1839 Male, age 51, unknown 11.1
2261 Male, age 18, unknown 11.0
Ventral tegmental area
nTPM: 12.9
2223 Female, age 72, unknown 15.6
2218 Male, age 76, both hemispheres 13.9
1942 Male, age 51, unknown 12.9
1915 Female, age 42, unknown 12.3
2021 Male, age 53, unknown 11.8
2410 Female, age 72, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.4
Samples: 139

Max nTPM: 60.4
Min nTPM: 24.9
Std nTPM: 7.0
Median nTPM: 39.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 60.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 60.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 57.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 57.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 50.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 49.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.1
FF:10158-103A5 76 years, female 49.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.9
Sample A Female 10.2
Sample B Female 9.9
Sample C Male 10.8
Sample D Male 10.1
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 10.8
Sample A Female 11.1
Sample B Female 10.9
Sample C Male 10.9
Sample D Male 10.8
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 11.6
Min nTPM: 9.9
Sample B Female 9.9
Sample C Male 10.0
Sample D Male 11.6
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 9.7
Sample C Male 11.6
Sample D Male 10.5

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