MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:61.1 nTPM
GTEx:12.2 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:27.1 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.4
2219 Male, age 76, both hemispheres 52.5
2586 Male, age 75, left hemisphere 46.5
2666 Male, age 74, left hemisphere 45.9
2411 Female, age 72, unknown 38.3
2828 Female, age 72, unknown 38.0
1827 Male, age 72, unknown 36.8
1833 Male, age 53, unknown 36.8
1830 Male, age 51, unknown 34.2
1870 Female, age 42, unknown 32.4
2019 Male, age 18, unknown 32.2
Dorsal raphe nucleus
nTPM: 40.0
2047 Male, age 72, unknown 44.5
1828 Male, age 53, unknown 42.0
2750 Male, age 76, both hemispheres 41.4
2298 Female, age 72, unknown 37.8
2016 Female, age 72, unknown 34.3
Inferior colliculus
nTPM: 30.8
1890 Male, age 53, unknown 32.4
2849 Male, age 72, unknown 32.4
1848 Female, age 42, unknown 30.6
2097 Female, age 72, unknown 27.7
Median raphe nucleus
nTPM: 47.3
2220 Male, age 76, midline 47.3
Periaquaductal grey, anterior
nTPM: 38.4
1947 Male, age 18, unknown 39.8
1795 Male, age 51, unknown 39.5
2502 Female, age 75, unknown 35.9
Periaquaductal grey, dorsal
nTPM: 31.2
1840 Male, age 53, unknown 35.2
2850 Male, age 76, both hemispheres 31.0
2464 Female, age 72, unknown 30.5
1831 Male, age 72, unknown 28.1
Periaquaductal grey, lateral
nTPM: 30.4
2053 Male, age 18, unknown 33.0
2140 Male, age 76, both hemispheres 31.5
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 32.8
2007 Male, age 72, unknown 38.6
2667 Female, age 75, unknown 35.6
2825 Male, age 18, unknown 35.5
1815 Male, age 53, unknown 34.9
2224 Female, age 72, unknown 34.9
1817 Female, age 42, unknown 34.7
1944 Female, age 72, unknown 32.8
1816 Male, age 51, unknown 32.1
2407 Male, age 75, both hemispheres 29.2
2316 Male, age 76, right hemisphere 29.1
2273 Male, age 74, both hemispheres 23.2
Red nucleus
nTPM: 36.3
2584 Male, age 75, left hemisphere 43.7
2588 Male, age 74, left hemisphere 39.7
1821 Female, age 72, unknown 39.0
2823 Male, age 76, right hemisphere 38.6
2725 Female, age 75, unknown 37.8
2769 Male, age 72, unknown 36.8
2227 Male, age 72, unknown 36.4
1904 Male, age 53, unknown 35.3
1954 Female, age 42, unknown 33.5
2503 Female, age 72, unknown 32.6
1865 Male, age 51, unknown 31.1
2785 Male, age 18, unknown 30.8
Substantia nigra
nTPM: 61.1
1916 Female, age 42, unknown 95.1
1851 Male, age 51, unknown 74.8
2665 Male, age 74, both hemispheres 70.8
2699 Male, age 18, unknown 70.2
2241 Male, age 72, unknown 66.6
2409 Female, age 72, unknown 54.6
1941 Male, age 53, unknown 53.6
2583 Male, age 75, right hemisphere 46.0
1889 Female, age 72, unknown 40.8
2590 Female, age 75, unknown 38.8
Superior colliculus
nTPM: 31.7
2668 Female, age 75, unknown 44.2
2664 Male, age 75, both hemispheres 36.5
1796 Male, age 53, unknown 35.3
1839 Male, age 51, unknown 33.0
1895 Male, age 76, right hemisphere 31.3
2587 Male, age 74, left hemisphere 30.1
2087 Female, age 72, unknown 30.0
2261 Male, age 18, unknown 30.0
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 22.3
Ventral tegmental area
nTPM: 51.2
2218 Male, age 76, both hemispheres 60.5
1915 Female, age 42, unknown 60.2
2410 Female, age 72, unknown 59.0
1942 Male, age 51, unknown 48.5
2223 Female, age 72, unknown 39.6
2021 Male, age 53, unknown 39.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 29.8
Min nTPM: 3.9
Std nTPM: 5.4
Median nTPM: 10.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 29.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 24.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 24.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 23.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 23.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 23.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 22.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 21.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 36.1
Min nTPM: 16.9
Sample A Female 28.1
Sample B Female 20.5
Sample C Male 36.1
Sample D Male 16.9
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 15.2
Sample A Female 15.2
Sample B Female 23.2
Sample C Male 22.8
Sample D Male 25.2
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 26.5
Min nTPM: 17.7
Sample B Female 22.8
Sample C Male 26.5
Sample D Male 17.7
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 21.6
Min nTPM: 12.0
Sample A Female 19.8
Sample B Female 12.0
Sample C Male 19.1
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 27.9
Min nTPM: 26.4
Sample A Male 26.5
Sample B Male 27.4
Sample C Female 27.9
Sample D Female 26.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
71656816 Antisense, RP_050927_04_D05, Mouse strain C57BL/6J (56 days, male) 9.1

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