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SNX10
HPA
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  • SNX10
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SNX10
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Sorting nexin 10
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p15.2
Chromosome location (bp) 26291862 - 26374383
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

18
Ensembl ENSG00000086300 (version 109)
Entrez gene 29887
HGNC HGNC:14974
UniProt Q9Y5X0 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y5X0
GeneCards SNX10
Antibodypedia SNX10 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Probable phosphoinositide-binding protein involved in protein sorting and membrane trafficking in endosomes. Plays a role in cilium biogenesis through regulation of the transport and the localization of proteins to the cilium. Required for the localization to the cilium of V-ATPase subunit ATP6V1D and ATP6V0D1, and RAB8A. Involved in osteoclast differentiation and therefore bone resorption.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cilium biogenesis/degradation, Protein transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein does not contain a coiled coil region, like some family members. This gene may play a role in regulating endosome homeostasis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SNX10-201
ENSP00000343709
ENST00000338523
Q9Y5X0
[Direct mapping] Sorting nexin-10
Show all
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001696 [gastric acid secretion]
GO:0005515 [protein binding]
GO:0005545 [1-phosphatidylinositol binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005783 [endoplasmic reticulum]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006886 [intracellular protein transport]
GO:0006897 [endocytosis]
GO:0007032 [endosome organization]
GO:0008289 [lipid binding]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016050 [vesicle organization]
GO:0019725 [cellular homeostasis]
GO:0030030 [cell projection organization]
GO:0030141 [secretory granule]
GO:0030316 [osteoclast differentiation]
GO:0031313 [extrinsic component of endosome membrane]
GO:0035091 [phosphatidylinositol binding]
GO:0035630 [bone mineralization involved in bone maturation]
GO:0044691 [tooth eruption]
GO:0045453 [bone resorption]
GO:0046849 [bone remodeling]
GO:0051117 [ATPase binding]
GO:0051649 [establishment of localization in cell]
GO:0055074 [calcium ion homeostasis]
GO:0060271 [cilium assembly]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:0090651 [apical cytoplasm]
GO:0097178 [ruffle assembly]
GO:1901981 [phosphatidylinositol phosphate binding]
GO:1990830 [cellular response to leukemia inhibitory factor]
Show all
201 aa
23.6 kDa
No 0
SNX10-202
ENSP00000379661
ENST00000396376
Q9Y5X0
[Direct mapping] Sorting nexin-10
Show all
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005545 [1-phosphatidylinositol binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005783 [endoplasmic reticulum]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006886 [intracellular protein transport]
GO:0007032 [endosome organization]
GO:0008289 [lipid binding]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016050 [vesicle organization]
GO:0030030 [cell projection organization]
GO:0030316 [osteoclast differentiation]
GO:0031313 [extrinsic component of endosome membrane]
GO:0035091 [phosphatidylinositol binding]
GO:0051117 [ATPase binding]
GO:0060271 [cilium assembly]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-203
ENSP00000387274
ENST00000409367
G5E9H5
[Direct mapping] Sorting nexin 10, isoform CRA_c; Sorting nexin-10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-204
ENSP00000386540
ENST00000409838
Q9Y5X0
[Direct mapping] Sorting nexin-10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005545 [1-phosphatidylinositol binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005783 [endoplasmic reticulum]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006886 [intracellular protein transport]
GO:0007032 [endosome organization]
GO:0008289 [lipid binding]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016050 [vesicle organization]
GO:0030030 [cell projection organization]
GO:0030316 [osteoclast differentiation]
GO:0031313 [extrinsic component of endosome membrane]
GO:0035091 [phosphatidylinositol binding]
GO:0051117 [ATPase binding]
GO:0060271 [cilium assembly]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
117 aa
13.2 kDa
No 0
SNX10-206
ENSP00000408164
ENST00000416246
C9JQ16
[Direct mapping] Sorting nexin-10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-207
ENSP00000395474
ENST00000446848
Q9Y5X0
[Direct mapping] Sorting nexin-10
Show all
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005545 [1-phosphatidylinositol binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005783 [endoplasmic reticulum]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006886 [intracellular protein transport]
GO:0007032 [endosome organization]
GO:0008289 [lipid binding]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016050 [vesicle organization]
GO:0030030 [cell projection organization]
GO:0030316 [osteoclast differentiation]
GO:0031313 [extrinsic component of endosome membrane]
GO:0035091 [phosphatidylinositol binding]
GO:0051117 [ATPase binding]
GO:0060271 [cilium assembly]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-209
ENSP00000513546
ENST00000698074
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-210
ENSP00000513547
ENST00000698075
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-211
ENSP00000513548
ENST00000698076
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-212
ENSP00000513549
ENST00000698077
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
192 aa
22.8 kDa
No 0
SNX10-213
ENSP00000513550
ENST00000698078
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-214
ENSP00000513551
ENST00000698079
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-215
ENSP00000513552
ENST00000698080
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-219
ENSP00000513555
ENST00000698084
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-222
ENSP00000513557
ENST00000698087
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
223 aa
26.1 kDa
No 0
SNX10-223
ENSP00000513558
ENST00000698088
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
201 aa
23.6 kDa
No 0
SNX10-224
ENSP00000513559
ENST00000698089
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0035091 [phosphatidylinositol binding]
Show all
161 aa
18.6 kDa
No 0
SNX10-225
ENSP00000513560
ENST00000698090
A0A024RA70
[Target identity:100%; Query identity:100%] Sorting nexin 10, isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0006886 [intracellular protein transport]
GO:0016020 [membrane]
GO:0035091 [phosphatidylinositol binding]
Show all
201 aa
23.6 kDa
No 0

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