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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.5 nTPM
GTEx:151.5 nTPM
FANTOM5:6.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051062
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 151.5
Samples: 156

Max nTPM: 742.8
Min nTPM: 0.0
Std nTPM: 176.8
Median nTPM: 79.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 742.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 694.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 692.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 648.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 544.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 532.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 521.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 510.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 484.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 479.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 474.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 446.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 441.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 433.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 432.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 430.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 422.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 419.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 387.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 385.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 381.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 376.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 371.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 366.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 360.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 359.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 345.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 336.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 334.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 330.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 329.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 308.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 300.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 298.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 278.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 276.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 273.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 273.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 254.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 252.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 252.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 246.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 242.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 238.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 236.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 225.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 216.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 203.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 200.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 196.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 191.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 171.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 161.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 157.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 155.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 152.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 148.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 148.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 147.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 143.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 130.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 126.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 126.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 115.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 114.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 114.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 110.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 108.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 107.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 104.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 104.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 99.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 97.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 95.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 92.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 84.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 84.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 80.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 78.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 74.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 74.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 71.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 69.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 67.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 59.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 57.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 55.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 50.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 48.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 47.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 45.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 38.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 36.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 34.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 33.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 31.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 31.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 27.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 25.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 24.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 23.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 22.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 20.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 20.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 19.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 18.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 16.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 15.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 15.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 13.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 12.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 11.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 9.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 9.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 8.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 8.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 6.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 6.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 6.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 5.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 5.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 0.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 0.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 6.4
FF:10204-103F6 68 years, female 6.4

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