We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PSMC5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PSMC5
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:71.4 nTPM
FANTOM5:128.7 Scaled Tags Per Million
Pig:146.2 nTPM
Mouse:273.0 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 60.1
2396 Male, age 61, right hemisphere 69.1
2032 Female, age 42, unknown 56.3
2497 Male, age 66, unknown 55.1
Centromedial thalamic nucleus
nTPM: 53.8
2401 Male, age 76, right hemisphere 74.6
2279 Female, age 85, left hemisphere 32.9
Habenula
nTPM: 62.6
1957 Male, age 80, both hemispheres 74.6
2203 Male, age 61, left hemisphere 71.0
2252 Male, age 62, unknown 52.8
2276 Male, age 66, unknown 51.9
Lateral geniculate body
nTPM: 69.8
2106 Female, age 67, right hemisphere 79.3
2575 Female, age 94, right hemisphere 76.0
1953 Male, age 62, unknown 74.3
2399 Male, age 61, left hemisphere 74.3
2035 Female, age 72, unknown 71.1
2857 Male, age 74, right hemisphere 66.7
2841 Male, age 80, both hemispheres 58.6
2659 Male, age 66, unknown 57.9
Lateral thalamic nuclei
nTPM: 61.7
2573 Female, age 94, left hemisphere 73.1
2765 Female, age 67, both hemispheres 71.3
1903 Male, age 76, left hemisphere 61.0
2577 Male, age 74, both hemispheres 55.2
2661 Female, age 72, unknown 47.9
Medial dorsal thalamic nucleus
nTPM: 64.8
2572 Female, age 94, right hemisphere 98.3
1859 Male, age 76, both hemispheres 76.0
1971 Male, age 61, right hemisphere 74.7
2498 Male, age 66, unknown 69.4
1810 Male, age 48, unknown 64.5
2402 Female, age 67, both hemispheres 62.6
1930 Female, age 42, unknown 62.0
2492 Male, age 75, right hemisphere 61.5
2576 Male, age 74, both hemispheres 59.6
2026 Male, age 62, unknown 59.1
2039 Female, age 72, unknown 56.4
2283 Male, age 80, right hemisphere 56.4
2660 Female, age 72, unknown 42.6
Medial geniculate body
nTPM: 58.1
2657 Male, age 74, right hemisphere 70.7
1811 Female, age 42, unknown 67.2
2650 Female, age 94, left hemisphere 62.8
2207 Male, age 80, right hemisphere 54.0
2571 Male, age 75, right hemisphere 53.5
2217 Female, age 72, unknown 49.5
2049 Male, age 76, both hemispheres 48.9
Nucleus reuniens
nTPM: 62.0
2212 Female, age 67, left hemisphere 74.5
2205 Male, age 80, left hemisphere 57.4
2210 Female, age 85, left hemisphere 54.0
Nucleus rhomboideus
nTPM: 53.3
2206 Male, age 80, both hemispheres 64.7
2213 Female, age 67, left hemisphere 51.8
2280 Female, age 85, left hemisphere 43.3
Posterior thalamic nucleus
nTPM: 71.4
2649 Female, age 94, both hemispheres 114.0
2655 Male, age 74, right hemisphere 61.0
2266 Male, age 76, right hemisphere 57.2
2495 Female, age 67, right hemisphere 53.5
Pulvinar
nTPM: 64.3
1972 Male, age 62, unknown 73.7
1932 Male, age 80, right hemisphere 71.4
2398 Male, age 61, left hemisphere 69.3
1929 Male, age 48, unknown 68.0
2724 Male, age 74, right hemisphere 66.6
2499 Male, age 66, unknown 65.0
2496 Female, age 67, right hemisphere 59.4
2214 Male, age 76, right hemisphere 57.6
1899 Female, age 42, unknown 57.4
2582 Female, age 72, unknown 54.3
Subthalamic nucleus
nTPM: 62.3
2124 Male, age 62, unknown 76.7
2658 Male, age 74, both hemispheres 69.8
2406 Female, age 72, unknown 66.9
2282 Male, age 61, both hemispheres 61.9
2779 Female, age 42, unknown 60.6
2056 Female, age 72, unknown 59.1
2275 Male, age 66, unknown 57.7
2216 Male, age 48, unknown 45.3
Ventral posterolateral thalamic nucleus
nTPM: 58.9
2397 Male, age 61, right hemisphere 67.2
2740 Male, age 76, right hemisphere 65.8
2570 Male, age 75, right hemisphere 62.8
2578 Male, age 74, both hemispheres 62.0
2197 Male, age 80, both hemispheres 61.9
2581 Female, age 72, unknown 33.9
Ventral posteromedial thalamic nucleus
nTPM: 61.3
2202 Male, age 61, left hemisphere 74.5
2281 Male, age 75, right hemisphere 63.2
2653 Male, age 74, both hemispheres 61.1
2758 Male, age 80, both hemispheres 58.4
2127 Male, age 76, right hemisphere 49.5
Ventral thalamic nuclei
nTPM: 61.7
1845 Male, age 48, unknown 76.9
1860 Male, age 76, both hemispheres 73.8
2580 Male, age 66, unknown 71.8
1912 Female, age 42, unknown 62.1
2204 Male, age 80, both hemispheres 57.5
2291 Female, age 72, unknown 56.1
2285 Male, age 62, unknown 55.1
2858 Female, age 72, unknown 51.0
2652 Male, age 74, left hemisphere 50.7
Zona incerta
nTPM: 53.7
2215 Male, age 66, unknown 63.7
2822 Male, age 74, right hemisphere 62.7
2403 Male, age 62, unknown 52.2
2208 Male, age 80, right hemisphere 51.3
2663 Female, age 72, unknown 38.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 128.7
FF:10154-103A1 76 years, female 128.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.2
Pig sample Sample description nTPM
Thalamus
nTPM: 146.2
Samples: 4

Max nTPM: 173.2
Min nTPM: 131.6
Sample A Female 173.2
Sample B Female 131.6
Sample C Male 147.6
Sample D Male 132.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 273.0
Samples: 4

Max nTPM: 299.0
Min nTPM: 245.4
Sample A Male 245.4
Sample B Male 299.0
Sample C Female 269.5
Sample D Female 278.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org