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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:3263.2 nTPM
FANTOM5:765.3 Scaled Tags Per Million
Pig:1770.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004011Antibody CAB017779
Glial cells HighHigh
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3263.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3263.2
Samples: 246

Max nTPM: 11790.5
Min nTPM: 762.0
Std nTPM: 1511.7
Median nTPM: 3037.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11790.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8572.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 7725.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 7477.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 6803.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 6765.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 6745.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6701.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 6695.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 6569.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 6216.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 6063.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6008.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5912.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 5910.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 5891.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5806.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 5804.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5708.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 5691.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5536.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5398.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5372.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5368.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 5266.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 5221.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5183.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 5182.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 5086.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4997.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 4992.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 4955.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 4923.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 4919.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4913.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 4878.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 4844.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4750.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4705.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 4637.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 4565.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 4522.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4485.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4482.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 4479.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 4444.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 4386.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 4322.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 4317.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4245.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 4244.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4166.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 4162.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 4162.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 4154.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4149.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 4131.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 4108.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3984.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 3973.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 3873.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3849.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3842.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3840.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 3838.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3823.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 3812.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 3784.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 3784.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 3773.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3772.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3759.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 3747.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3742.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 3741.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 3736.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3720.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 3704.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3687.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3684.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 3649.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 3644.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 3620.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3594.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 3589.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3578.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 3558.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 3523.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3430.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3428.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3420.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3408.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3387.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 3378.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 3375.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3358.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 3354.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3317.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3310.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 3304.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 3299.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3292.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 3290.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3282.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 3280.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 3264.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3262.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3259.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 3258.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3252.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 3248.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3240.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3234.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 3234.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3227.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3202.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3150.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 3148.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3130.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 3100.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3078.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3063.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 3039.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 3035.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2955.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2950.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2943.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2941.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2905.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2884.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2861.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2853.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2848.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2816.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2804.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2797.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2760.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2759.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2759.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2738.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2711.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2695.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2692.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2680.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2678.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2670.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2667.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2651.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2646.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2635.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2623.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2621.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2568.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2549.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2537.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2514.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2511.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2510.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2504.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2502.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2495.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2462.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2462.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2451.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2450.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2425.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2404.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2370.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2367.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2342.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2327.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2325.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2323.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2323.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2317.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2311.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2304.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2289.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2277.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2246.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2245.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2231.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2207.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2175.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2131.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2117.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2099.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2090.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2086.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2056.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2055.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2054.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2043.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2031.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2029.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2021.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 2020.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2011.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2008.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1984.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1961.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1946.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1942.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1938.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1922.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1900.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1893.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1887.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1873.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1863.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1845.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1802.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1793.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1791.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1759.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1744.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1732.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1722.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1703.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1686.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1678.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1669.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1645.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1629.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1627.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1604.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1602.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1558.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1549.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1502.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1499.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1497.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1478.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1464.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1416.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1380.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1328.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1279.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1255.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1251.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1238.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1168.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1153.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1089.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 851.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 762.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

765.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 765.3
FF:10164-103B2 76 years, female 765.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1770.9
Pig sample Sample description nTPM
Caudate
nTPM: 1770.9
Samples: 4

Max nTPM: 2209.3
Min nTPM: 1490.2
Sample A Female 1670.3
Sample B Female 1713.6
Sample C Male 2209.3
Sample D Male 1490.2

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