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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1408.8 nTPM
HPA Brain:980.6 nTPM
GTEx:1408.8 nTPM
FANTOM5:375.6 Scaled Tags Per Million
Pig:1332.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

980.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 895.8
1981 Female, age 72, midline 1103.8
2194 Female, age 79, both hemispheres 1091.6
2048 Male, age 55, midline 877.3
2816 Male, age 47, midline 744.0
2565 Male, age 75, midline 662.5
Cervical spinal cord, dorsal horn
nTPM: 980.6
2173 Female, age 72, unknown 1491.0
2296 Male, age 66, both hemispheres 1035.9
1877 Male, age 55, unknown 956.4
2069 Male, age 47, both hemispheres 918.3
2297 Male, age 75, both hemispheres 813.3
2721 Male, age 90, both hemispheres 668.8
Cervical spinal cord, ventral horn
nTPM: 967.1
2068 Male, age 55, unknown 1089.3
2480 Male, age 75, both hemispheres 1063.0
2295 Male, age 66, both hemispheres 961.8
2820 Female, age 79, both hemispheres 948.9
2809 Male, age 90, both hemispheres 895.4
2098 Female, age 72, unknown 844.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1408.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1408.8
Samples: 159

Max nTPM: 4954.9
Min nTPM: 367.4
Std nTPM: 637.6
Median nTPM: 1252.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4954.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3264.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3129.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3027.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2994.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2762.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2691.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2417.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2414.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2414.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2408.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2372.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2358.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2267.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2262.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2225.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2219.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2188.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2159.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2152.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2137.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2121.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2089.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2075.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2073.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2031.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1996.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1995.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1977.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1941.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1880.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1873.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1836.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1827.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1817.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1773.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1766.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1703.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1679.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1673.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1666.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1661.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1636.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1632.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1618.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1614.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1613.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1596.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1590.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1572.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1571.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1555.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1554.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1550.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1535.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1488.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1481.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1456.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1443.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1439.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1436.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1434.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1418.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1416.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1410.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1402.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1401.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1397.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1363.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1344.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1321.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1316.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1303.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1302.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1300.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1300.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1287.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1276.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1274.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1252.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1244.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1242.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1239.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1227.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1217.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1210.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1190.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1190.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1184.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1181.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1175.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1174.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1169.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1162.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1156.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1140.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1139.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1132.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1129.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1128.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1127.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1126.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1113.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1111.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1109.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1106.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1104.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1102.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1097.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1093.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1078.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1063.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1062.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1053.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1044.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1044.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1009.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1009.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1001.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 986.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 957.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 953.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 946.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 928.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 922.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 911.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 908.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 907.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 903.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 899.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 890.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 871.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 847.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 810.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 809.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 800.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 780.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 778.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 764.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 759.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 758.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 754.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 748.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 739.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 732.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 731.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 717.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 716.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 714.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 710.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 681.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 636.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 624.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 603.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 597.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 567.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 537.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 437.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 367.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

375.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 375.6
FF:10159-103A6 76 years, female 401.1
FF:10181-103D1 60 years, female 350.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1332.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 994.5
Samples: 4

Max nTPM: 1036.3
Min nTPM: 939.8
Sample A Female 1024.1
Sample B Female 939.8
Sample C Male 1036.3
Sample D Male 977.7
Ventral spinal cord
nTPM: 1332.4
Samples: 4

Max nTPM: 1645.8
Min nTPM: 1080.2
Sample A Female 1229.2
Sample B Female 1374.4
Sample C Male 1645.8
Sample D Male 1080.2

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