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KHSRP
HPA
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  • KHSRP
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

KHSRP
Synonyms FBP2, FUBP2, KSRP
Gene descriptioni

Full gene name according to HGNC.

KH-type splicing regulatory protein
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband p13.3
Chromosome location (bp) 6413102 - 6424811
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000088247 (version 109)
Entrez gene 8570
HGNC HGNC:6316
UniProt Q92945 (UniProt - Evidence at protein level)
neXtProt NX_Q92945
GeneCards KHSRP
Antibodypedia KHSRP antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds to the dendritic targeting element and may play a role in mRNA trafficking (By similarity). Part of a ternary complex that binds to the downstream control sequence (DCS) of the pre-mRNA. Mediates exon inclusion in transcripts that are subject to tissue-specific alternative splicing. May interact with single-stranded DNA from the far-upstream element (FUSE). May activate gene expression. Also involved in degradation of inherently unstable mRNAs that contain AU-rich elements (AREs) in their 3'-UTR, possibly by recruiting degradation machinery to ARE-containing mRNAs.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding, RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

mRNA processing, mRNA splicing, mRNA transport, Transcription, Transcription regulation, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

The KHSRP gene encodes a multifunctional RNA-binding protein implicated in a variety of cellular processes, including transcription, alternative pre-mRNA splicing, and mRNA localization (Min et al., 1997 [PubMed 9136930]; Gherzi et al., 2004).[supplied by OMIM, Apr 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
KHSRP-201
ENSP00000381216
ENST00000398148
Q92945
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000178 [exosome (RNase complex)]
GO:0000375 [RNA splicing, via transesterification reactions]
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006397 [mRNA processing]
GO:0006457 [protein folding]
GO:0008380 [RNA splicing]
GO:0010468 [regulation of gene expression]
GO:0010586 [miRNA metabolic process]
GO:0010989 [negative regulation of low-density lipoprotein particle clearance]
GO:0016020 [membrane]
GO:0035925 [mRNA 3'-UTR AU-rich region binding]
GO:0043488 [regulation of mRNA stability]
GO:0044183 [protein folding chaperone]
GO:0045019 [negative regulation of nitric oxide biosynthetic process]
GO:0051028 [mRNA transport]
GO:0061014 [positive regulation of mRNA catabolic process]
GO:0061158 [3'-UTR-mediated mRNA destabilization]
GO:0071345 [cellular response to cytokine stimulus]
Show all
711 aa
73.1 kDa
No 0
KHSRP-202
ENSP00000472347
ENST00000594496
M0R263
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0005634 [nucleus]
GO:0006355 [regulation of DNA-templated transcription]
Show all
143 aa
14.9 kDa
No 0
KHSRP-203
ENSP00000469804
ENST00000594745
M0QYG1
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0005634 [nucleus]
GO:0006355 [regulation of DNA-templated transcription]
Show all
114 aa
12.3 kDa
No 0
KHSRP-205
ENSP00000473254
ENST00000595223
M0R3J3
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of DNA-templated transcription]
Show all
269 aa
28 kDa
No 0
KHSRP-206
ENSP00000469431
ENST00000595258
M0QXW7
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005654 [nucleoplasm]
Show all
116 aa
12.1 kDa
No 0
KHSRP-207
ENSP00000469830
ENST00000595548
M0QYH3
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005654 [nucleoplasm]
Show all
169 aa
18 kDa
No 0
KHSRP-208
ENSP00000472328
ENST00000597656
M0R251
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0005634 [nucleus]
GO:0006355 [regulation of DNA-templated transcription]
Show all
79 aa
8.4 kDa
No 0
KHSRP-210
ENSP00000471262
ENST00000599395
M0R0I5
[Direct mapping] Far upstream element-binding protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005654 [nucleoplasm]
Show all
279 aa
29.3 kDa
No 0
KHSRP-212
ENSP00000471146
ENST00000600480
M0R0C6
[Direct mapping] Far upstream element-binding protein 2; KH-type splicing regulatory protein (FUSE binding protein 2), isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006402 [mRNA catabolic process]
GO:0010494 [cytoplasmic stress granule]
GO:2000628 [regulation of miRNA metabolic process]
Show all
747 aa
76.7 kDa
No 0

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