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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
208.9
nTPM
FANTOM5:
161.8
Scaled Tags Per Million
Pig:
48.9
nTPM
Allen mouse:
10.4
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
208.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 181.9
2188
Female, age 91, both hemispheres
238.2
2090
Male, age 80, both hemispheres
191.8
2301
Female, age 85, both hemispheres
178.9
1984
Male, age 76, both hemispheres
118.9
Dorsal cochlear nucleus nTPM: 171.8
2802
Male, age 74, right hemisphere
216.2
2187
Female, age 91, both hemispheres
183.0
2378
Male, age 80, both hemispheres
176.7
2370
Male, age 61, both hemispheres
143.4
2058
Male, age 76, both hemispheres
139.6
Dorsal tegmental nucleus nTPM: 150.7
2083
Male, age 80, both hemispheres
171.9
2326
Male, age 74, both hemispheres
162.7
1936
Male, age 76, left hemisphere
154.0
2358
Male, age 61, both hemispheres
114.1
Dorsolateral tegmental area nTPM: 150.6
2751
Female, age 85, both hemispheres
207.5
2654
Male, age 80, both hemispheres
173.9
2360
Male, age 74, both hemispheres
131.7
2337
Male, age 61, both hemispheres
130.0
2141
Male, age 76, both hemispheres
109.9
Kolliker-Fuse nucleus nTPM: 166.9
2793
Female, age 91, left hemisphere
235.0
2163
Male, age 80, both hemispheres
158.4
2315
Male, age 76, right hemisphere
107.4
Lateral lemniscal nuclei nTPM: 188.0
2320
Female, age 91, left hemisphere
227.6
2036
Male, age 80, both hemispheres
196.8
2453
Male, age 74, right hemisphere
195.7
2746
Female, age 85, left hemisphere
177.4
2169
Male, age 76, both hemispheres
142.6
Lateral parabrachial nucleus nTPM: 169.2
2792
Male, age 76, both hemispheres
216.1
2013
Male, age 80, both hemispheres
185.3
2790
Male, age 61, both hemispheres
140.6
2139
Female, age 85, right hemisphere
134.9
Lateral vestibular nucleus nTPM: 151.6
2184
Male, age 76, both hemispheres
162.7
2311
Male, age 80, both hemispheres
140.4
Locus coeruleus nTPM: 113.9
2162
Male, age 80, both hemispheres
132.6
2720
Male, age 74, both hemispheres
132.4
2014
Male, age 55, unknown
125.6
2317
Female, age 72, unknown
111.5
2788
Male, age 74, unknown
110.6
2123
Female, age 91, both hemispheres
95.3
1980
Male, age 76, both hemispheres
89.2
Medial parabrachial nucleus nTPM: 165.5
2463
Female, age 85, right hemisphere
190.3
2170
Female, age 91, both hemispheres
185.5
2786
Male, age 76, both hemispheres
159.6
2854
Male, age 80, both hemispheres
158.0
2156
Male, age 61, both hemispheres
133.9
Medial periolivary nuclei nTPM: 169.1
2458
Female, age 91, both hemispheres
203.5
2081
Male, age 80, both hemispheres
194.6
2791
Male, age 74, right hemisphere
181.1
2171
Female, age 85, both hemispheres
144.0
2063
Male, age 76, both hemispheres
122.5
Motor facial nucleus nTPM: 170.9
2126
Male, age 61, both hemispheres
194.7
2697
Female, age 85, both hemispheres
190.3
2795
Female, age 91, both hemispheres
180.7
2365
Male, age 74, right hemisphere
169.8
2327
Male, age 80, both hemispheres
165.6
2062
Male, age 76, both hemispheres
124.5
Motor trigeminal nucleus nTPM: 191.0
2560
Male, age 74, both hemispheres
247.9
2321
Female, age 91, both hemispheres
220.6
2079
Male, age 80, both hemispheres
172.4
2309
Male, age 76, both hemispheres
172.1
2335
Male, age 61, both hemispheres
141.8
Nuclei of the trapezoid body nTPM: 164.6
2368
Female, age 91, both hemispheres
211.6
2166
Male, age 80, both hemispheres
193.5
2159
Male, age 61, both hemispheres
172.2
2735
Female, age 85, both hemispheres
127.6
1983
Male, age 76, both hemispheres
117.9
Nucleus raphe magnus nTPM: 163.6
2459
Female, age 91, both hemispheres
198.6
2328
Male, age 80, both hemispheres
180.9
2455
Male, age 74, both hemispheres
175.5
2051
Male, age 76, both hemispheres
152.3
2172
Female, age 85, both hemispheres
139.0
2160
Male, age 61, both hemispheres
135.6
Paramedian reticular nucleus nTPM: 185.7
2052
Male, age 76, both hemispheres
239.4
2050
Female, age 85, both hemispheres
181.1
2057
Male, age 80, both hemispheres
175.6
2313
Male, age 61, both hemispheres
146.8
Pedunculopontine tegmental nucleus nTPM: 140.2
2334
Male, age 80, both hemispheres
146.9
1921
Female, age 85, both hemispheres
142.0
2338
Male, age 61, both hemispheres
131.7
Pontine nuclei nTPM: 190.8
2454
Male, age 74, left hemisphere
265.4
2319
Female, age 91, both hemispheres
223.5
2109
Female, age 72, unknown
195.8
2115
Male, age 80, left hemisphere
185.7
1863
Male, age 55, unknown
171.1
2727
Male, age 61, right hemisphere
166.3
2787
Female, age 85, both hemispheres
162.6
1968
Male, age 76, left hemisphere
156.3
Pontine raphe nucleus nTPM: 147.7
2122
Female, age 85, midline
156.3
2853
Male, age 76, midline
139.2
Posteroventral cochlear nucleus nTPM: 187.7
2135
Female, age 91, both hemispheres
271.5
2341
Male, age 80, both hemispheres
203.7
2371
Male, age 61, both hemispheres
158.2
2070
Male, age 76, both hemispheres
156.1
2752
Female, age 85, both hemispheres
148.7
Principal sensory trigeminal nucleus nTPM: 172.2
2367
Female, age 91, left hemisphere
228.6
2008
Male, age 80, left hemisphere
172.9
2324
Male, age 76, both hemispheres
146.9
2158
Male, age 61, both hemispheres
140.4
Reticular pontine nucleus, caudal nTPM: 194.8
2559
Male, age 74, both hemispheres
245.8
2457
Female, age 91, both hemispheres
208.3
2092
Male, age 76, both hemispheres
163.5
2332
Male, age 80, right hemisphere
161.7
Reticular pontine nucleus, oral nTPM: 208.9
2366
Female, age 91, both hemispheres
248.4
2361
Male, age 74, both hemispheres
225.9
1939
Male, age 80, both hemispheres
196.8
2012
Female, age 85, both hemispheres
187.7
2167
Male, age 76, both hemispheres
185.6
Reticulotegmental nucleus nTPM: 171.9
2452
Male, age 74, both hemispheres
209.1
2322
Female, age 91, both hemispheres
175.9
2333
Male, age 80, both hemispheres
168.2
2325
Male, age 76, both hemispheres
134.3
Spinal trigeminal nucleus, oral nTPM: 145.9
2164
Male, age 80, both hemispheres
165.2
1978
Male, age 76, both hemispheres
141.5
2737
Female, age 85, both hemispheres
130.8
Subcoeruleus area nTPM: 170.4
2369
Female, age 85, left hemisphere
237.6
2089
Male, age 76, left hemisphere
163.3
2451
Male, age 74, both hemispheres
163.0
1958
Male, age 80, both hemispheres
160.9
2323
Female, age 91, left hemisphere
127.3
Superior olive nTPM: 186.3
2561
Female, age 91, both hemispheres
202.5
2020
Male, age 76, both hemispheres
193.6
2329
Male, age 80, right hemisphere
191.5
1875
Female, age 85, both hemispheres
175.1
2364
Male, age 74, right hemisphere
168.9
Ventral periolivary nuclei nTPM: 167.1
2023
Male, age 76, both hemispheres
199.0
2794
Female, age 91, left hemisphere
182.2
2165
Male, age 80, both hemispheres
152.6
2130
Female, age 85, both hemispheres
134.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 177.8
2456
Female, age 91, both hemispheres
216.2
2840
Female, age 85, both hemispheres
185.4
2449
Male, age 74, both hemispheres
179.8
1959
Male, age 76, both hemispheres
167.1
2161
Male, age 80, both hemispheres
163.3
2359
Male, age 61, both hemispheres
155.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.9
Pig sample
Sample description
nTPM
Pons nTPM: 48.9
Samples: 4
Max nTPM: 69.5
Min nTPM: 37.7
Sample A
Female
69.5
Sample B
Female
37.7
Sample C
Male
38.7
Sample D
Male
49.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
