MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA Brain:64.3 nTPM
GTEx:61.0 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:37.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2586 Male, age 75, left hemisphere 91.4
2828 Female, age 72, unknown 79.8
1833 Male, age 53, unknown 57.6
1870 Female, age 42, unknown 57.1
1830 Male, age 51, unknown 55.3
2666 Male, age 74, left hemisphere 53.4
1827 Male, age 72, unknown 51.3
2411 Female, age 72, unknown 49.3
2019 Male, age 18, unknown 46.7
2219 Male, age 76, both hemispheres 36.2
Dorsal raphe nucleus
nTPM: 60.9
2016 Female, age 72, unknown 69.8
1828 Male, age 53, unknown 66.5
2047 Male, age 72, unknown 62.9
2750 Male, age 76, both hemispheres 52.8
2298 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 56.4
1848 Female, age 42, unknown 58.4
2849 Male, age 72, unknown 58.2
1890 Male, age 53, unknown 57.0
2097 Female, age 72, unknown 52.1
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 58.8
2502 Female, age 75, unknown 62.6
1947 Male, age 18, unknown 57.4
1795 Male, age 51, unknown 56.5
Periaquaductal grey, dorsal
nTPM: 59.7
2850 Male, age 76, both hemispheres 76.7
1840 Male, age 53, unknown 55.7
2464 Female, age 72, unknown 54.4
1831 Male, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 58.2
2140 Male, age 76, both hemispheres 79.3
2053 Male, age 18, unknown 56.4
2272 Male, age 74, both hemispheres 38.9
Pretectal area
nTPM: 53.6
2316 Male, age 76, right hemisphere 68.4
2825 Male, age 18, unknown 59.1
2667 Female, age 75, unknown 56.6
1815 Male, age 53, unknown 54.8
2407 Male, age 75, both hemispheres 54.6
1817 Female, age 42, unknown 53.9
2273 Male, age 74, both hemispheres 52.0
1944 Female, age 72, unknown 50.1
2007 Male, age 72, unknown 48.3
2224 Female, age 72, unknown 48.2
1816 Male, age 51, unknown 43.7
Red nucleus
nTPM: 64.3
2769 Male, age 72, unknown 74.4
2227 Male, age 72, unknown 72.0
1954 Female, age 42, unknown 70.5
1821 Female, age 72, unknown 69.7
2503 Female, age 72, unknown 69.2
1904 Male, age 53, unknown 67.9
1865 Male, age 51, unknown 63.9
2588 Male, age 74, left hemisphere 63.6
2725 Female, age 75, unknown 60.6
2823 Male, age 76, right hemisphere 59.3
2584 Male, age 75, left hemisphere 51.8
2785 Male, age 18, unknown 48.5
Substantia nigra
nTPM: 53.7
2699 Male, age 18, unknown 79.0
1916 Female, age 42, unknown 65.3
1851 Male, age 51, unknown 59.4
1889 Female, age 72, unknown 56.4
2583 Male, age 75, right hemisphere 54.2
2665 Male, age 74, both hemispheres 49.3
2409 Female, age 72, unknown 48.2
2590 Female, age 75, unknown 44.1
1941 Male, age 53, unknown 42.9
2241 Male, age 72, unknown 37.9
Superior colliculus
nTPM: 58.9
1995 Male, age 72, unknown 77.4
2664 Male, age 75, both hemispheres 68.6
2668 Female, age 75, unknown 64.3
1913 Female, age 42, unknown 62.5
1796 Male, age 53, unknown 59.2
1839 Male, age 51, unknown 57.9
2261 Male, age 18, unknown 55.6
2087 Female, age 72, unknown 54.6
2587 Male, age 74, left hemisphere 44.3
1895 Male, age 76, right hemisphere 44.2
Ventral tegmental area
nTPM: 53.1
1942 Male, age 51, unknown 60.1
1915 Female, age 42, unknown 55.2
2021 Male, age 53, unknown 53.7
2410 Female, age 72, unknown 53.4
2218 Male, age 76, both hemispheres 50.1
2223 Female, age 72, unknown 45.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.0
Samples: 139

Max nTPM: 183.1
Min nTPM: 10.5
Std nTPM: 32.2
Median nTPM: 51.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 183.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 178.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 172.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 158.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 148.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 148.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 148.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 141.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 119.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 119.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 106.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.3
Samples: 4

Max nTPM: 53.7
Min nTPM: 35.8
Sample A Female 44.1
Sample B Female 35.8
Sample C Male 43.4
Sample D Male 53.7
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 89.4
Min nTPM: 28.0
Sample A Female 89.4
Sample B Female 35.4
Sample C Male 33.7
Sample D Male 28.0
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 39.7
Min nTPM: 34.2
Sample B Female 34.7
Sample C Male 39.7
Sample D Male 34.2
Superior colliculi
nTPM: 32.1
Samples: 4

Max nTPM: 39.9
Min nTPM: 19.4
Sample A Female 34.4
Sample B Female 19.4
Sample C Male 34.8
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 40.9
Min nTPM: 32.7
Sample A Male 40.9
Sample B Male 32.7
Sample C Female 34.3
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
67881784 Antisense, RP_040923_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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