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SLC4A11
HPA
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  • SLC4A11
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC4A11
Synonyms BTR1, CDPD1, CHED2, dJ794I6.2, FECD4, NaBC1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 4 member 11
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 20
Cytoband p13
Chromosome location (bp) 3227417 - 3239559
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000088836 (version 109)
Entrez gene 83959
HGNC HGNC:16438
UniProt Q8NBS3 (UniProt - Evidence at protein level)
neXtProt NX_Q8NBS3
GeneCards SLC4A11
Antibodypedia SLC4A11 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Multifunctional transporter with an impact in cell morphology and differentiation. In the presence of borate B(OH)4(-), acts as a voltage-dependent electrogenic Na(+)-coupled B(OH)4(-) cotransporter controlling boron homeostasis 1. At early stages of stem cell differentiation, participates in synergy with ITGA5-ITGB1 and ITGAV-ITGB3 integrins and BMPR1A to promote cell adhesion and contractility that drives differentiation toward osteogenic commitment while inhibiting adipogenesis (By similarity). In the absence of B(OH)4(-), acts as a Na(+)-coupled OH(-) or H(+) permeable channel with implications in cellular redox balance 2, 3. Regulates the oxidative stress response in corneal endothelium by enhancing antioxidant defenses and protecting cells from reactive oxygen species 4. In response to hypo-osmotic challenge, also acts as a water permeable channel at the basolateral cell membrane of corneal endothelial cells and facilitates transendothelial fluid reabsorption in the aqueous humor 5, 6, 7. In the presence of ammonia, acts as an electrogenic NH3/H(+) cotransporter and may play a role in ammonia transport and reabsorption in renal Henle's loop epithelium 8.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Anion exchange, Ion transport, Symport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a voltage-regulated, electrogenic sodium-coupled borate cotransporter that is essential for borate homeostasis, cell growth and cell proliferation. Mutations in this gene have been associated with a number of endothelial corneal dystrophies including recessive corneal endothelial dystrophy 2, corneal dystrophy and perceptive deafness, and Fuchs endothelial corneal dystrophy. Multiple transcript variants encoding different isoforms have been described. [provided by RefSeq, Mar 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC4A11-201
ENSP00000369396
ENST00000380056
Q8NBS3
[Direct mapping] Solute carrier family 4 member 11
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0005372 [water transmembrane transporter activity]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0006833 [water transport]
GO:0012506 [vesicle membrane]
GO:0015078 [proton transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015252 [proton channel activity]
GO:0015293 [symporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030003 [cellular cation homeostasis]
GO:0034599 [cellular response to oxidative stress]
GO:0035445 [borate transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042044 [fluid transport]
GO:0046713 [borate transport]
GO:0046715 [active borate transmembrane transporter activity]
GO:0046983 [protein dimerization activity]
GO:0050801 [ion homeostasis]
GO:0051881 [regulation of mitochondrial membrane potential]
GO:0055085 [transmembrane transport]
GO:0071476 [cellular hypotonic response]
GO:1902600 [proton transmembrane transport]
GO:2000739 [regulation of mesenchymal stem cell differentiation]
Show all
891 aa
99.6 kDa
No >9
SLC4A11-202
ENSP00000369399
ENST00000380059
Q8NBS3
[Direct mapping] Solute carrier family 4 member 11
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0005372 [water transmembrane transporter activity]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0006833 [water transport]
GO:0012506 [vesicle membrane]
GO:0015078 [proton transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015252 [proton channel activity]
GO:0015293 [symporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030003 [cellular cation homeostasis]
GO:0034599 [cellular response to oxidative stress]
GO:0035445 [borate transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042044 [fluid transport]
GO:0046713 [borate transport]
GO:0046715 [active borate transmembrane transporter activity]
GO:0046983 [protein dimerization activity]
GO:0050801 [ion homeostasis]
GO:0051881 [regulation of mitochondrial membrane potential]
GO:0055085 [transmembrane transport]
GO:0071476 [cellular hypotonic response]
GO:1902600 [proton transmembrane transport]
GO:2000739 [regulation of mesenchymal stem cell differentiation]
Show all
918 aa
103.1 kDa
No >9
SLC4A11-203
ENSP00000404271
ENST00000437836
V9GXZ2
[Direct mapping] Solute carrier family 4 member 11
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0016020 [membrane]
Show all
104 aa
11.7 kDa
No 0
SLC4A11-207
ENSP00000493503
ENST00000642402
Q8NBS3
[Direct mapping] Solute carrier family 4 member 11
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0005372 [water transmembrane transporter activity]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0006833 [water transport]
GO:0012506 [vesicle membrane]
GO:0015078 [proton transmembrane transporter activity]
GO:0015106 [bicarbonate transmembrane transporter activity]
GO:0015252 [proton channel activity]
GO:0015293 [symporter activity]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0030003 [cellular cation homeostasis]
GO:0034599 [cellular response to oxidative stress]
GO:0035445 [borate transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042044 [fluid transport]
GO:0046713 [borate transport]
GO:0046715 [active borate transmembrane transporter activity]
GO:0046983 [protein dimerization activity]
GO:0050801 [ion homeostasis]
GO:0051881 [regulation of mitochondrial membrane potential]
GO:0055085 [transmembrane transport]
GO:0071476 [cellular hypotonic response]
GO:1902600 [proton transmembrane transport]
GO:2000739 [regulation of mesenchymal stem cell differentiation]
Show all
875 aa
98.2 kDa
No >9
SLC4A11-208
ENSP00000496214
ENST00000644011
A0A2R8Y7S1
[Direct mapping] Solute carrier family 4 member 11
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006811 [ion transport]
GO:0006820 [anion transport]
GO:0015698 [inorganic anion transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
852 aa
95.4 kDa
No >9
SLC4A11-209
ENSP00000493824
ENST00000644692
A0A2R8Y4A6
[Direct mapping] Solute carrier family 4 member 11
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0015698 [inorganic anion transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
808 aa
90.4 kDa
No >9
SLC4A11-210
ENSP00000495559
ENST00000644862
A0A2R8YEG3
[Direct mapping] Solute carrier family 4 member 11
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
10 aa
1.2 kDa
No 0
SLC4A11-212
ENSP00000495050
ENST00000647296
A0A2R8YFD9
[Direct mapping] Solute carrier family 4 member 11
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006811 [ion transport]
GO:0006820 [anion transport]
GO:0015698 [inorganic anion transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
837 aa
94.2 kDa
No >9

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