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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:200.4 nTPM
HPA:196.4 nTPM
GTEx:200.4 nTPM
FANTOM5:321.2 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.4
overview
Male, age 65
Small intestine sample 232
nTPM: 167.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 234.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 191.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 192

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 200.4
Samples: 187

Max nTPM: 443.9
Min nTPM: 66.5
Std nTPM: 69.1
Median nTPM: 191.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 443.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 437.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 397.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 377.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 370.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 363.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 363.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 332.6
GTEX-1192X-2526-SM-59868 50-59 years, male 332.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 328.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 323.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 321.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 309.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 301.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 297.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 293.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 293.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 287.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 283.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 280.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 277.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 277.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 276.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 276.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 275.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 274.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 274.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 272.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 272.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 271.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 270.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 265.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 262.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 258.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 258.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 256.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 256.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 253.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 253.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 252.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 252.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 247.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 245.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 244.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 238.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 237.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 235.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 234.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 234.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 234.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 233.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 232.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 232.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 231.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 229.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 228.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 228.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 227.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 227.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 227.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 222.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 222.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 221.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 221.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 220.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 220.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 218.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 217.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 217.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 216.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 216.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 214.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 214.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 213.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 211.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 211.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 211.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 210.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 210.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 209.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 207.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 206.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 205.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 203.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 203.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 199.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 199.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 199.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 198.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 197.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 196.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 195.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 192.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 191.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 191.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 191.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 187.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 187.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 187.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 186.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 185.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 185.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 184.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 182.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 181.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 180.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 179.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 179.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 177.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 176.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 176.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 174.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 173.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 173.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 173.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 171.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 171.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 170.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 170.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 170.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 170.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 169.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 169.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 166.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 165.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 164.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 162.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 160.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 160.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 160.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 159.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 159.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 158.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 156.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 155.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 153.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 151.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 150.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 149.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 148.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 147.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 147.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 147.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 147.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 146.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 145.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 143.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 141.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 141.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 141.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 137.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 135.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 134.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 133.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 133.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 132.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 131.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 130.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 129.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 129.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 129.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 126.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 124.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 123.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 123.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 122.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 122.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 120.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 118.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 116.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 115.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 114.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 114.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 113.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 111.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 111.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 107.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 107.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 105.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 104.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 102.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 97.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 96.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 92.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 83.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 66.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

321.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 321.2
FF:10024-101D6 15,40,85 years, mixed 321.2

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