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RPL6
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • STRUCT & INT

  • RPL6
CANCER STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
STAD TCGA PROTEIN EXPRESSION
ANTIBODIES
AND
VALIDATION
Dictionary
Stomach cancer
Human cancer
Stomach adenocarcinoma
STOMACH ADENOCARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPL6 is not prognostic in Stomach Adenocarcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 1339.93
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 1317.6
Number of samples 346
Samples
Sample Description pTPM
TCGA-IN-A6RS-01A 76 years, male, white, stage:Stage IA, alive, 383 days 3799.0
TCGA-D7-A74A-01A 61 years, female, white, stage:Stage IIIA, alive, 607 days 3746.0
TCGA-BR-8676-01A 59 years, male, white, stage:Stage IIIB, alive, 229 days 2758.4
TCGA-CD-8535-01A 59 years, male, asian, stage:Stage IIIA, alive, 390 days 2739.1
TCGA-BR-8589-01A 56 years, male, white, stage:Stage IIIB, alive, 825 days 2708.1
TCGA-D7-A6EX-01A 72 years, female, white, stage:Stage IIIA, alive, 344 days 2554.0
TCGA-HU-A4GT-01A 71 years, female, asian, stage:Stage IIA, alive, 198 days 2503.7
TCGA-CD-8528-01A 43 years, female, asian, stage:Stage IIIA, alive, 375 days 2501.0
TCGA-IN-7806-01A 50 years, male, white, stage:Stage IIB, alive, 1106 days 2430.2
TCGA-BR-8680-01A 45 years, male, asian, stage:Stage IV, alive, 972 days 2426.0
TCGA-BR-7959-01A 59 years, male, white, stage:Stage IIIA, alive, 1010 days 2416.8
TCGA-BR-8059-01A 72 years, male, white, stage:Stage III, dead, 439 days 2376.4
TCGA-HU-A4G2-01A 45 years, male, asian, stage:Stage IIB, alive, 739 days 2362.1
TCGA-BR-7717-01A 63 years, male, white, stage:Stage IV, dead, 552 days 2339.1
TCGA-VQ-A91X-01A 74 years, male, white, stage:Stage IIIB, dead, 289 days 2288.6
TCGA-BR-6707-01A 75 years, male, white, stage:Stage IIA, dead, 605 days 2259.1
TCGA-BR-7723-01A 59 years, male, white, stage:Stage IIIB, dead, 874 days 2199.6
TCGA-SW-A7EB-01A 45 years, male, white, stage:Stage IIIA, alive, 176 days 2144.4
TCGA-BR-7707-01A 69 years, female, white, stage:Stage IB, alive, 1090 days 2101.1
TCGA-D7-A4YX-01A 63 years, male, white, stage:Stage IIB, alive, 1108 days 2095.3
TCGA-HU-8604-01A 82 years, female, asian, stage:Stage IIA, alive, 694 days 2072.9
TCGA-BR-8381-01A 51 years, male, white, stage:Stage IIB, alive, 224 days 2062.2
TCGA-BR-8361-01A 71 years, female, white, stage:Stage IIIC, alive, 946 days 2061.1
TCGA-VQ-A8PH-01A 62 years, male, white, stage:Stage IIIB, dead, 389 days 2034.7
TCGA-HU-A4H4-01A 53 years, female, asian, stage:Stage IIB, alive, 725 days 2024.5
TCGA-BR-8295-01A 60 years, female, white, stage:Stage IIB, dead, 67 days 2023.0
TCGA-VQ-A928-01A 49 years, male, white, stage:Stage IV, dead, 174 days 2000.4
TCGA-BR-4201-01A 66 years, female, white, stage:'--, dead, 940 days 1992.9
TCGA-VQ-A8P2-01A 68 years, male, white, stage:Stage IIIA, alive, 1160 days 1940.1
TCGA-BR-6455-01A 59 years, male, white, stage:Stage IIB, dead, 422 days 1934.3
TCGA-RD-A7C1-01A 82 years, male, white, stage:Stage IB, dead, 507 days 1933.0
TCGA-BR-8372-01A 63 years, male, white, stage:Stage IIIC, alive, 951 days 1919.2
TCGA-CD-8531-01A 66 years, female, asian, stage:Stage IIIA, alive, 383 days 1916.4
TCGA-BR-7716-01A 62 years, female, white, stage:Stage IIB, alive, 1210 days 1907.8
TCGA-B7-A5TN-01A 60 years, male, white, stage:Stage IIB, alive, 287 days 1898.8
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:Stage IV, dead, 259 days 1891.9
TCGA-IN-8663-01A 68 years, male, white, stage:Stage IIB, dead, 103 days 1890.2
TCGA-SW-A7EA-01A 61 years, female, white, stage:Stage IB, alive, 579 days 1889.5
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:Stage IIIB, alive, 1319 days 1859.5
TCGA-RD-A8N6-01A 78 years, female, white, stage:Stage IIIA, dead, 272 days 1852.1
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:Stage IIIC, dead, 3 days 1838.3
TCGA-BR-8289-01A 57 years, male, white, stage:Stage IV, dead, 81 days 1827.5
TCGA-CD-8534-01A 41 years, male, asian, stage:Stage II, alive, 367 days 1782.6
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:Stage IIIB, alive, 1000 days 1782.2
TCGA-VQ-A8PB-01A 65 years, female, white, stage:Stage II, dead, 1043 days 1780.4
TCGA-BR-6563-01A 60 years, male, white, stage:Stage IIB, alive, 1190 days 1778.2
TCGA-BR-4253-01A 80 years, female, white, stage:Stage IIIA, dead, 124 days 1776.6
TCGA-CG-4438-01A 56 years, male, stage:Stage IV, alive, 1645 days 1759.6
TCGA-KB-A6F7-01A 54 years, female, stage:Stage IB, alive, 1935 days 1751.5
TCGA-BR-8678-01A 76 years, male, white, stage:Stage IB, alive, 754 days 1743.4
TCGA-CD-8530-01A 51 years, male, asian, stage:Stage II, alive, 377 days 1723.5
TCGA-D7-8573-01A 57 years, male, white, stage:Stage IIA, alive, 593 days 1719.2
TCGA-IN-A7NU-01A 69 years, male, white, stage:Stage IIIB, alive, 356 days 1713.5
TCGA-CG-4306-01A 90 years, male, stage:Stage IV, dead, 1 days 1712.0
TCGA-CG-5721-01A 58 years, male, stage:Stage IV, alive, 183 days 1704.2
TCGA-BR-8366-01A 80 years, female, white, stage:Stage IIA, alive, 29 days 1692.7
TCGA-CG-4466-01A 81 years, female, stage:Stage IB, alive, 577 days 1677.7
TCGA-B7-A5TK-01A 51 years, male, white, stage:Stage IIIA, alive, 288 days 1671.0
TCGA-HU-A4H5-01A 71 years, male, asian, stage:Stage IB, alive, 724 days 1669.3
TCGA-IN-7808-01A 59 years, male, white, stage:'--, dead, 105 days 1669.2
TCGA-BR-6453-01A 54 years, male, white, stage:Stage IIA, alive, 485 days 1665.6
TCGA-VQ-A94T-01A 73 years, male, stage:Stage IIIB, dead, 342 days 1664.3
TCGA-R5-A7ZI-01A 44 years, female, white, stage:Stage IV, alive, 2267 days 1663.8
TCGA-HF-A5NB-01A 75 years, female, stage:Stage IIIC, alive, 928 days 1661.6
TCGA-BR-A4QL-01A 75 years, female, white, stage:Stage IIIB, dead, 491 days 1657.0
TCGA-CG-5722-01A 67 years, female, stage:Stage IV, alive, 30 days 1642.0
TCGA-B7-A5TI-01A 52 years, male, white, stage:Stage IIIC, alive, 595 days 1638.9
TCGA-CG-4469-01A 70 years, male, stage:Stage IV, dead, 215 days 1637.4
TCGA-BR-4279-01A 43 years, male, white, stage:Stage II, dead, 291 days 1635.2
TCGA-VQ-AA69-01A 35 years, male, white, stage:Stage IIIA, alive, 864 days 1612.1
TCGA-CG-5724-01A 59 years, male, stage:Stage IV, dead, 366 days 1602.2
TCGA-CD-8526-01A 73 years, female, asian, stage:Stage IIIA, alive, 381 days 1600.7
TCGA-CD-8525-01A 82 years, female, asian, stage:Stage IIIA, alive, 383 days 1599.8
TCGA-BR-7957-01A 50 years, female, white, stage:Stage IV, dead, 276 days 1598.7
TCGA-CG-4465-01A 69 years, female, stage:Stage IV, dead, 274 days 1592.7
TCGA-VQ-A8PE-01A 78 years, male, white, stage:Stage IIIB, dead, 675 days 1586.0
TCGA-CD-5798-01A 82 years, male, asian, stage:Stage II, alive, 408 days 1584.3
TCGA-D7-8572-01A 57 years, male, white, stage:Stage IIB, alive, 511 days 1583.7
TCGA-HF-7133-01A female, stage:Stage IV, alive, 1918 days 1581.5
TCGA-CG-5726-01A 73 years, male, stage:Stage IA, dead, 881 days 1578.0
TCGA-D7-6527-01A 62 years, male, white, stage:Stage II, dead, 312 days 1568.9
TCGA-BR-8371-01A 62 years, male, white, stage:Stage IIIB, dead, 359 days 1555.7
TCGA-VQ-A8DV-01A 48 years, male, white, stage:Stage IB, dead, 403 days 1550.2
TCGA-IN-A6RN-01A 72 years, female, white, stage:Stage IIA, alive, 594 days 1550.2
TCGA-CD-A487-01A 51 years, male, asian, stage:Stage IIB, alive, 374 days 1543.4
TCGA-D7-6525-01A 58 years, male, white, stage:Stage IIIA, dead, 406 days 1535.1
TCGA-HU-A4H0-01A 72 years, male, asian, stage:Stage IIIC, alive, 64 days 1534.8
TCGA-BR-A4PF-01A 72 years, male, white, stage:Stage IIIB, alive, 35 days 1524.2
TCGA-VQ-A8E3-01A 79 years, male, white, stage:Stage IIA, dead, 661 days 1523.2
TCGA-BR-8367-01A 55 years, male, white, stage:Stage IIIB, dead, 801 days 1518.9
TCGA-HU-A4GX-01A 70 years, female, asian, stage:Stage IIIC, alive, 616 days 1515.5
TCGA-CD-5799-01A 45 years, male, asian, stage:Stage II, alive, 396 days 1512.1
TCGA-CG-4305-01A 69 years, male, stage:Stage II, alive, 485 days 1510.5
TCGA-BR-A4J4-01A 39 years, male, asian, stage:Stage IIIB, alive, 16 days 1501.9
TCGA-BR-4267-01A 51 years, male, white, stage:Stage IB, dead, 188 days 1487.1
TCGA-CD-5813-01A 60 years, male, asian, stage:Stage II, dead, 377 days 1486.1
TCGA-BR-8380-01A 55 years, male, white, stage:Stage IIIC, dead, 21 days 1480.1
TCGA-VQ-A92D-01A 67 years, male, white, stage:Stage IB, alive, 2032 days 1478.8
TCGA-CG-5720-01A 71 years, male, stage:Stage IB, dead, 30 days 1473.2
TCGA-VQ-A924-01A 69 years, male, stage:Stage II, dead, 1686 days 1473.2
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:Stage IV, dead, 262 days 1472.2
TCGA-BR-A44U-01A 70 years, male, white, stage:Stage IIIB, dead, 422 days 1470.5
TCGA-D7-6519-01A 64 years, female, white, stage:'--, alive, 625 days 1466.7
TCGA-VQ-A94R-01A 63 years, male, white, stage:'--, dead, 1294 days 1461.0
TCGA-BR-7196-01A 64 years, male, white, stage:Stage IV, alive, 666 days 1459.1
TCGA-HJ-7597-01A 71 years, female, white, stage:Stage IB, dead, 805 days 1457.3
TCGA-VQ-A8P5-01A 67 years, male, white, stage:Stage IIA, dead, 235 days 1455.7
TCGA-CD-5803-01A 78 years, female, asian, stage:Stage II, dead, 341 days 1450.0
TCGA-BR-8677-01A 74 years, female, white, stage:Stage IIIB, alive, 813 days 1448.2
TCGA-IN-A6RI-01A 45 years, male, white, stage:Stage I, alive, 559 days 1436.5
TCGA-BR-8077-01A 58 years, female, white, stage:Stage IIIB, alive, 21 days 1434.3
TCGA-VQ-A8PP-01A 76 years, male, stage:Stage IV, dead, 712 days 1430.3
TCGA-CG-4444-01A 76 years, male, stage:Stage IIIA, alive, 1431 days 1427.4
TCGA-BR-4280-01A 78 years, female, white, stage:Stage III, dead, 201 days 1413.6
TCGA-BR-8365-01A 70 years, female, white, stage:Stage IIA, dead, 533 days 1411.2
TCGA-CG-4440-01A 68 years, female, stage:Stage IV, dead, 122 days 1407.5
TCGA-FP-8210-01A 48 years, male, asian, stage:Stage IIIA, dead, 153 days 1403.6
TCGA-VQ-A8PO-01A 74 years, male, white, stage:Stage IIB, dead, 282 days 1402.3
TCGA-BR-8487-01A 64 years, female, white, stage:Stage IIA, alive, 34 days 1400.1
TCGA-BR-4256-01A 80 years, male, white, stage:'--, dead, 284 days 1397.3
TCGA-BR-6566-01A 64 years, female, white, stage:Stage IIA, alive, 997 days 1390.6
TCGA-D7-5577-01A 53 years, female, white, stage:Stage IIIA, dead, 782 days 1389.9
TCGA-VQ-A91N-01A 59 years, female, stage:Stage IV, dead, 570 days 1385.6
TCGA-MX-A663-01A 66 years, male, white, stage:Stage IIA, dead, 300 days 1385.4
TCGA-MX-A666-01A 61 years, male, white, stage:Stage IIA, alive, 427 days 1377.9
TCGA-VQ-A91Z-01A 67 years, female, white, stage:Stage IIIA, alive, 1690 days 1370.8
TCGA-D7-8575-01A 75 years, male, white, stage:Stage IIIA, dead, 554 days 1369.3
TCGA-RD-A8NB-01A 80 years, female, white, stage:Stage IIIA, dead, 513 days 1366.6
TCGA-D7-A747-01A 57 years, male, white, stage:Stage IIB, dead, 255 days 1366.3
TCGA-CD-8527-01A 72 years, female, asian, stage:Stage II, dead, 218 days 1363.0
TCGA-VQ-A8DU-01A 63 years, male, white, stage:Stage IIIA, dead, 166 days 1359.1
TCGA-HU-8238-01A 56 years, male, asian, stage:'--, alive, 46 days 1357.6
TCGA-BR-8368-01A 84 years, female, white, stage:Stage IB, alive, 131 days 1355.2
TCGA-RD-A7BW-01A 68 years, female, white, stage:Stage IB, dead, 156 days 1354.7
TCGA-BR-A44T-01A 53 years, female, white, stage:Stage IIA, alive, 1038 days 1352.1
TCGA-CD-A48C-01A 79 years, female, asian, stage:Stage IIB, dead, 353 days 1343.9
TCGA-CG-4460-01A 66 years, female, stage:Stage IV, dead, 669 days 1342.7
TCGA-HU-A4GU-01A 73 years, male, asian, stage:Stage IIB, alive, 200 days 1337.1
TCGA-BR-7715-01A 65 years, male, white, stage:Stage IIA, alive, 1023 days 1336.2
TCGA-BR-7958-01A 60 years, male, white, stage:Stage IIIB, alive, 899 days 1335.5
TCGA-D7-6524-01A 53 years, male, white, stage:Stage II, alive, 543 days 1335.1
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:Stage IV, dead, 476 days 1334.4
TCGA-RD-A8N1-01A 70 years, male, white, stage:Stage IIIB, alive, 3519 days 1332.1
TCGA-BR-8058-01A 53 years, female, white, stage:Stage IIIB, alive, 1133 days 1332.0
TCGA-VQ-A94U-01A 70 years, male, white, stage:Stage IIB, alive, 819 days 1331.8
TCGA-VQ-AA6F-01A 57 years, male, white, stage:Stage IIB, alive, 1646 days 1325.4
TCGA-BR-6709-01A 57 years, female, white, stage:Stage IIIB, dead, 370 days 1324.5
TCGA-BR-8286-01A 49 years, male, white, stage:Stage II, alive, 895 days 1323.6
TCGA-HU-A4H3-01A 56 years, female, asian, stage:Stage IIIC, alive, 882 days 1321.8
TCGA-VQ-A91A-01A 67 years, male, white, stage:Stage IIIB, alive, 1200 days 1321.5
TCGA-BR-8690-01A 54 years, female, white, stage:Stage IIIB, alive, 325 days 1321.5
TCGA-HU-8602-01A 58 years, female, asian, stage:Stage IIB, alive, 679 days 1320.9
TCGA-BR-8284-01A 72 years, female, white, stage:Stage IIIC, dead, 245 days 1320.5
TCGA-D7-6528-01A 70 years, female, white, stage:Stage IB, alive, 463 days 1308.9
TCGA-BR-6458-01A 57 years, female, white, stage:Stage IIB, dead, 588 days 1303.0
TCGA-KB-A93H-01A 79 years, female, asian, stage:Stage IIB, alive, 1145 days 1290.2
TCGA-BR-8588-01A 55 years, female, white, stage:Stage IIB, alive, 389 days 1285.3
TCGA-BR-4257-01A 79 years, female, white, stage:'--, dead, 294 days 1285.2
TCGA-HU-A4G9-01A 67 years, female, asian, stage:Stage IA, alive, 736 days 1282.7
TCGA-BR-8591-01A 79 years, male, white, stage:Stage IIIC, alive, 856 days 1281.9
TCGA-BR-7704-01A 69 years, female, white, stage:Stage II, alive, 1072 days 1275.9
TCGA-D7-A748-01A 41 years, female, white, stage:Stage IV, dead, 132 days 1274.2
TCGA-CD-5800-01A 51 years, female, asian, stage:Stage II, alive, 400 days 1273.3
TCGA-BR-6452-01A 78 years, female, white, stage:Stage IIA, alive, 1055 days 1270.2
TCGA-CG-5732-01A 66 years, male, stage:Stage IV, dead, 2100 days 1268.7
TCGA-CG-4477-01A 58 years, female, stage:Stage IB, alive, 942 days 1264.7
TCGA-BR-8081-01A 71 years, female, white, stage:Stage IIB, alive, 981 days 1263.7
TCGA-VQ-A8DT-01A 43 years, male, stage:Stage IIIB, alive, 1484 days 1263.6
TCGA-D7-A6EY-01A 72 years, female, white, stage:Stage IIIB, dead, 348 days 1263.3
TCGA-IN-A7NT-01A 73 years, female, white, stage:Stage IIB, alive, 323 days 1260.8
TCGA-BR-8364-01A 42 years, female, white, stage:Stage IIIC, alive, 675 days 1258.3
TCGA-CG-4437-01A 83 years, male, stage:Stage II, alive, 245 days 1248.5
TCGA-HF-7134-01A male, stage:Stage IA, alive, 1588 days 1246.4
TCGA-FP-A9TM-01A 77 years, male, white, stage:'--, alive, 189 days 1245.5
TCGA-HU-8608-01A 70 years, male, asian, stage:Stage IIIB, alive, 641 days 1242.9
TCGA-IN-A6RR-01A 84 years, male, white, stage:'--, dead, 205 days 1242.6
TCGA-F1-A72C-01A 68 years, male, asian, stage:Stage IIA, alive, 346 days 1240.0
TCGA-CD-5801-01A 69 years, male, asian, stage:Stage IIIA, dead, 401 days 1239.9
TCGA-BR-8369-01A 76 years, female, white, stage:Stage IIIB, alive, 427 days 1238.7
TCGA-HU-A4G8-01A 71 years, female, asian, stage:Stage IIB, alive, 690 days 1234.6
TCGA-D7-A6F0-01A 79 years, female, white, stage:Stage IB, alive, 678 days 1233.0
TCGA-CG-5719-01A 54 years, female, stage:Stage IV, alive, 31 days 1232.4
TCGA-IN-AB1X-01A 78 years, female, white, stage:Stage IIA, alive, 411 days 1232.0
TCGA-BR-6705-01A 68 years, female, white, stage:Stage IIIB, dead, 779 days 1230.6
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:Stage IIIB, alive, 838 days 1227.8
TCGA-CD-8524-01A 61 years, female, asian, stage:Stage II, alive, 388 days 1225.3
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:Stage IIIC, alive, 650 days 1220.7
TCGA-D7-5578-01A 80 years, male, white, stage:Stage IIIA, alive, 385 days 1209.7
TCGA-HF-7132-01A male, stage:Stage II, alive, 2351 days 1209.6
TCGA-CD-8533-01A 48 years, male, asian, stage:Stage II, alive, 468 days 1207.9
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:Stage IIIC, dead, 640 days 1206.9
TCGA-CD-A489-01A 58 years, male, asian, stage:Stage IIA, dead, 344 days 1205.5
TCGA-BR-8686-01A 69 years, male, asian, stage:Stage IIIB, dead, 635 days 1205.3
TCGA-BR-6803-01A 54 years, female, white, stage:Stage IIA, alive, 949 days 1203.9
TCGA-FP-8209-01A 49 years, male, white, stage:Stage IB, dead, 1811 days 1202.9
TCGA-CG-4301-01A 75 years, female, stage:Stage IV, alive, 92 days 1200.8
TCGA-D7-6522-01A 58 years, male, white, stage:Stage IB, alive, 566 days 1200.7
TCGA-BR-8484-01A 61 years, male, white, stage:Stage IIIA, dead, 766 days 1189.2
TCGA-CD-A48A-01A 57 years, male, asian, stage:Stage IIA, alive, 378 days 1187.4
TCGA-BR-A4CS-01A 77 years, male, white, stage:Stage IIIC, dead, 45 days 1183.6
TCGA-CD-A4MG-01A 76 years, male, asian, stage:Stage IIA, dead, 200 days 1183.1
TCGA-D7-A6EV-01A 71 years, female, white, stage:Stage IIB, alive, 342 days 1180.3
TCGA-BR-A4J7-01A 49 years, male, asian, stage:Stage IIB, alive, 989 days 1175.7
TCGA-BR-8683-01A 75 years, male, asian, stage:Stage IIIB, dead, 300 days 1174.6
TCGA-VQ-A8PJ-01A 53 years, male, stage:Stage IV, dead, 82 days 1173.2
TCGA-BR-7851-01A 74 years, male, white, stage:Stage IIB, dead, 574 days 1171.4
TCGA-VQ-A91U-01A 78 years, male, asian, stage:Stage IIIA, dead, 52 days 1167.0
TCGA-BR-8384-01A 69 years, male, white, stage:Stage IIIC, alive, 113 days 1165.1
TCGA-HU-A4GD-01A 56 years, male, asian, stage:Stage IIB, alive, 692 days 1160.2
TCGA-IN-A7NR-01A 64 years, female, white, stage:Stage IV, alive, 198 days 1157.0
TCGA-BR-6564-01A 46 years, female, white, stage:Stage IIIA, dead, 794 days 1155.8
TCGA-HU-A4GF-01A 69 years, male, asian, stage:Stage IIA, alive, 785 days 1155.0
TCGA-D7-6526-01A 67 years, female, white, stage:Stage IIIA, alive, 523 days 1152.5
TCGA-BR-6565-01A 67 years, male, white, stage:Stage IIB, dead, 279 days 1150.4
TCGA-VQ-AA6D-01A 52 years, female, stage:Stage IIIA, alive, 521 days 1149.7
TCGA-BR-A4J9-01A 55 years, male, white, stage:Stage IIA, alive, 14 days 1147.4
TCGA-VQ-A8PU-01A 72 years, female, white, stage:Stage IIIA, dead, 832 days 1147.4
TCGA-D7-8574-01A 72 years, male, white, stage:Stage IIIA, alive, 523 days 1146.6
TCGA-D7-6815-01A 70 years, female, white, stage:Stage IIB, alive, 486 days 1141.4
TCGA-BR-8485-01A 68 years, female, white, stage:Stage IIIC, alive, 280 days 1139.9
TCGA-RD-A8N9-01A 63 years, female, asian, stage:Stage II, alive, 1083 days 1136.0
TCGA-MX-A5UJ-01A 86 years, female, white, stage:Stage IIIA, alive, 600 days 1131.4
TCGA-B7-5818-01A 62 years, male, white, stage:Stage IB, alive, 356 days 1129.6
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:Stage III, dead, 185 days 1125.9
TCGA-D7-A6EZ-01A 66 years, male, white, stage:Stage IIIA, dead, 618 days 1117.1
TCGA-MX-A5UG-01A 78 years, male, asian, stage:Stage IIIA, dead, 113 days 1116.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:Stage IIIB, dead, 869 days 1113.2
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:Stage IV, dead, 396 days 1112.2
TCGA-VQ-A8PD-01A 69 years, male, white, stage:Stage IIIC, dead, 496 days 1107.2
TCGA-BR-8373-01A 65 years, female, white, stage:Stage IIIA, alive, 450 days 1107.0
TCGA-HU-8244-01A 77 years, female, asian, stage:Stage IA, alive, 742 days 1100.3
TCGA-HU-A4G3-01A 54 years, male, asian, stage:Stage IIB, alive, 170 days 1097.1
TCGA-BR-8291-01A 61 years, male, white, stage:Stage IIB, dead, 607 days 1095.3
TCGA-BR-7197-01A 69 years, male, white, stage:Stage II, alive, 280 days 1094.0
TCGA-BR-8382-01A 67 years, female, white, stage:Stage IIIC, dead, 762 days 1094.0
TCGA-BR-8080-01A 72 years, female, white, stage:Stage IIIC, dead, 292 days 1089.9
TCGA-FP-7916-01A 77 years, male, asian, stage:Stage IIIC, dead, 428 days 1088.6
TCGA-VQ-A8PF-01A 76 years, male, stage:Stage IIIB, dead, 76 days 1087.7
TCGA-EQ-8122-01A 71 years, female, white, stage:Stage IIB, dead, 243 days 1086.5
TCGA-FP-8631-01A 68 years, male, white, stage:Stage IIIA, alive, 17 days 1082.9
TCGA-VQ-A8PX-01A 51 years, male, stage:Stage IA, alive, 1964 days 1079.2
TCGA-BR-4187-01A 56 years, male, white, stage:'--, dead, 141 days 1077.3
TCGA-BR-6457-01A 69 years, male, white, stage:Stage IIA, alive, 416 days 1075.7
TCGA-BR-8687-01A 67 years, female, white, stage:Stage IIIC, dead, 250 days 1074.7
TCGA-D7-8579-01A 66 years, female, white, stage:Stage IIB, alive, 636 days 1071.7
TCGA-CG-4475-01A 76 years, male, stage:Stage IIB, alive, 699 days 1064.2
TCGA-VQ-A925-01A 66 years, male, white, stage:Stage IIIA, dead, 138 days 1049.3
TCGA-VQ-A8P3-01A 72 years, male, white, stage:Stage IIIA, alive, 1132 days 1047.1
TCGA-BR-8592-01A 63 years, female, white, stage:Stage IIIB, dead, 191 days 1044.1
TCGA-HU-A4HB-01A 68 years, male, asian, stage:Stage IIB, dead, 477 days 1041.0
TCGA-BR-8297-01A 58 years, male, white, stage:Stage IIIC, alive, 225 days 1040.5
TCGA-RD-A7BS-01A 46 years, male, white, stage:Stage IIIA, dead, 336 days 1039.4
TCGA-FP-7829-01A 69 years, male, white, stage:Stage IIB, alive, 594 days 1035.5
TCGA-BR-8590-01A 62 years, male, white, stage:Stage IIIC, dead, 284 days 1026.8
TCGA-F1-6875-01A 79 years, male, black or african american, stage:Stage IA, dead, 2197 days 1024.7
TCGA-IN-AB1V-01A 63 years, male, white, stage:Stage IA, alive, 479 days 1022.4
TCGA-IN-8462-01A 80 years, male, white, stage:Stage IIB, alive, 572 days 1013.1
TCGA-CG-5717-01A 58 years, male, stage:Stage II, dead, 212 days 1012.7
TCGA-CG-5723-01A 83 years, male, stage:Stage II, alive, 2496 days 1012.3
TCGA-D7-8570-01A 44 years, male, white, stage:Stage IIIB, alive, 752 days 1010.0
TCGA-FP-A8CX-01A 60 years, male, white, stage:Stage IIIC, alive, 7 days 1009.1
TCGA-ZA-A8F6-01A 71 years, male, white, stage:Stage IB, alive, 525 days 1007.1
TCGA-RD-A8N5-01A 78 years, male, white, stage:Stage IIIA, dead, 1747 days 1005.8
TCGA-IN-A6RJ-01A 64 years, male, white, stage:Stage IA, alive, 379 days 1005.0
TCGA-FP-A4BF-01A 68 years, male, white, stage:Stage IIIA, dead, 168 days 1000.6
TCGA-HU-A4GP-01A 62 years, female, asian, stage:Stage IIA, alive, 273 days 999.4
TCGA-HU-A4GC-01A 74 years, male, asian, stage:Stage IIIB, alive, 99 days 999.2
TCGA-VQ-A94P-01A 57 years, male, white, stage:'--, dead, 81 days 981.3
TCGA-HU-A4HD-01A 73 years, male, asian, stage:Stage IIIA, alive, 1016 days 981.1
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:Stage IIB, alive, 942 days 979.3
TCGA-HU-8610-01A 75 years, male, asian, stage:Stage IA, alive, 23 days 978.7
TCGA-3M-AB46-01A 70 years, male, white, stage:Stage IB, alive, 1765 days 974.5
TCGA-BR-A4J5-01A 56 years, male, asian, stage:Stage IIIA, alive, 862 days 966.4
TCGA-BR-8296-01A 58 years, female, white, stage:Stage IIIC, dead, 474 days 965.8
TCGA-VQ-A91Y-01A 67 years, male, white, stage:Stage IIIC, dead, 296 days 963.0
TCGA-KB-A93G-01A 68 years, male, white, stage:Stage IB, alive, 613 days 962.5
TCGA-BR-4191-01A 72 years, male, white, stage:'--, dead, 558 days 959.9
TCGA-VQ-A91E-01A 67 years, female, white, stage:Stage IIIB, alive, 664 days 957.6
TCGA-HU-8249-01A 76 years, male, asian, stage:Stage IIIA, alive, 881 days 954.2
TCGA-D7-A4YU-01A 73 years, male, white, stage:Stage IIIB, alive, 500 days 952.6
TCGA-BR-6801-01A 70 years, male, white, stage:Stage IIA, alive, 1223 days 952.0
TCGA-IP-7968-01A 74 years, male, white, stage:Stage IIIB, alive, 77 days 947.2
TCGA-RD-A8N0-01A 53 years, female, white, stage:Stage IIIB, alive, 1236 days 940.7
TCGA-D7-8576-01A 54 years, female, white, stage:Stage IIIB, dead, 446 days 937.5
TCGA-BR-8682-01A 52 years, male, asian, stage:Stage IIB, alive, 991 days 934.8
TCGA-VQ-A8PC-01A 65 years, male, white, stage:Stage IIIA, dead, 1407 days 934.4
TCGA-BR-6802-01A 65 years, male, white, stage:Stage IIIA, alive, 940 days 928.8
TCGA-FP-7998-01A 77 years, male, white, stage:Stage IIIC, alive, 678 days 927.7
TCGA-D7-A6F2-01A 62 years, male, white, stage:Stage IB, alive, 476 days 924.6
TCGA-IN-A6RL-01A 84 years, male, white, stage:'--, dead, 406 days 920.5
TCGA-F1-A448-01A 70 years, male, white, stage:Stage IIIB, alive, 647 days 919.9
TCGA-RD-A8MW-01A 72 years, male, white, stage:Stage IIIB, dead, 1153 days 919.8
TCGA-RD-A8N4-01A 58 years, female, white, stage:Stage IIIA, alive, 2171 days 917.3
TCGA-D7-6521-01A 65 years, male, white, stage:'--, alive, 564 days 912.0
TCGA-CD-8532-01A 52 years, male, asian, stage:Stage II, dead, 354 days 885.5
TCGA-HU-A4GY-01A 76 years, female, asian, stage:Stage IIIA, alive, 8 days 880.8
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:Stage IIIC, dead, 24 days 879.1
TCGA-VQ-A91K-01A 69 years, male, white, stage:Stage IIIA, alive, 1862 days 877.0
TCGA-VQ-A922-01A 70 years, male, stage:Stage IV, dead, 275 days 875.5
TCGA-BR-7722-01A 62 years, male, white, stage:Stage IIB, dead, 466 days 868.2
TCGA-R5-A7O7-01A 51 years, male, white, stage:Stage IV, alive, 1389 days 858.0
TCGA-CD-A486-01A 68 years, male, asian, stage:Stage IIA, dead, 192 days 856.9
TCGA-CG-4441-01A 83 years, male, stage:Stage IIIA, dead, 426 days 849.9
TCGA-BR-7901-01A 74 years, male, white, stage:Stage IIB, dead, 105 days 838.6
TCGA-RD-A8MV-01A 56 years, male, white, stage:Stage IIIB, alive, 3720 days 827.6
TCGA-FP-8099-01A 79 years, male, white, stage:Stage IIA, alive, 519 days 827.2
TCGA-F1-6874-01A 79 years, male, white, stage:Stage IB, alive, 440 days 823.3
TCGA-CG-4436-01A 57 years, male, stage:Stage IB, alive, 243 days 819.6
TCGA-VQ-AA6A-01A 56 years, male, white, stage:Stage IIIC, alive, 1184 days 814.6
TCGA-BR-A4J6-01A 69 years, female, white, stage:Stage IIA, alive, 20 days 806.9
TCGA-CD-8529-01A 65 years, male, asian, stage:Stage IV, alive, 374 days 806.5
TCGA-D7-6822-01A 77 years, male, white, stage:Stage IB, alive, 375 days 805.4
TCGA-R5-A805-01A 71 years, male, white, stage:Stage IIIB, dead, 281 days 798.7
TCGA-RD-A8N2-01A 59 years, female, white, stage:Stage IB, alive, 3540 days 794.0
TCGA-D7-A4Z0-01A 60 years, female, white, stage:Stage IIB, alive, 449 days 793.9
TCGA-VQ-AA6G-01A 68 years, male, white, stage:Stage IIA, dead, 792 days 792.5
TCGA-VQ-A8PM-01A 56 years, male, white, stage:Stage IV, dead, 57 days 788.5
TCGA-BR-8060-01A 75 years, female, white, stage:Stage IIB, dead, 348 days 787.2
TCGA-BR-8483-01A 59 years, male, white, stage:Stage IIIA, alive, 164 days 784.5
TCGA-KB-A93J-01A 78 years, male, white, stage:Stage II, alive, 1124 days 772.8
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:Stage IIIA, dead, 562 days 771.1
TCGA-D7-6818-01A 53 years, male, white, stage:Stage IIIA, dead, 376 days 770.7
TCGA-VQ-AA68-01A 52 years, female, white, stage:Stage IIIC, alive, 1328 days 766.7
TCGA-BR-A4J8-01A 71 years, female, white, stage:Stage IIIB, alive, 411 days 753.4
TCGA-VQ-A91Q-01A 61 years, male, stage:Stage IV, dead, 633 days 742.5
TCGA-CG-5718-01A 78 years, female, stage:Stage II, dead, 1095 days 741.4
TCGA-FP-7735-01A 77 years, male, black or african american, stage:Stage IB, dead, 106 days 737.4
TCGA-VQ-A927-01A 81 years, male, white, stage:Stage IIIB, dead, 200 days 726.6
TCGA-HU-A4H2-01A 58 years, female, asian, stage:Stage IIIB, alive, 394 days 725.0
TCGA-BR-6852-01A 64 years, female, white, stage:Stage IIA, alive, 1367 days 722.2
TCGA-BR-6456-01A 74 years, female, white, stage:Stage IIB, dead, 526 days 718.7
TCGA-HU-A4H6-01A 72 years, female, asian, stage:Stage IIIA, alive, 644 days 718.7
TCGA-VQ-AA64-01A 68 years, male, white, stage:Stage IIIB, dead, 560 days 681.9
TCGA-D7-8578-01A 72 years, male, white, stage:Stage IB, alive, 643 days 677.2
TCGA-CG-5725-01A 72 years, male, stage:Stage IB, dead, 457 days 667.5
TCGA-CD-A4MH-01A 86 years, female, asian, stage:Stage IIA, alive, 371 days 637.7
TCGA-VQ-AA6K-01A 59 years, male, white, stage:Stage IIIC, dead, 378 days 637.2
TCGA-B7-A5TJ-01A 74 years, male, white, stage:Stage IIB, alive, 335 days 592.1
TCGA-VQ-A91V-01A 58 years, male, stage:Stage IIIA, alive, 1297 days 555.8
TCGA-CG-4443-01A 68 years, male, stage:Stage IA, alive, 912 days 532.4
TCGA-D7-6520-01A 53 years, male, white, stage:Stage IIIA, alive, 573 days 530.4
TCGA-VQ-A8PK-01A 58 years, male, white, stage:Stage IIIB, dead, 543 days 523.4
TCGA-CG-5734-01A 68 years, male, stage:Stage IIIA, dead, 243 days 519.2
TCGA-FP-8211-01A 62 years, male, white, stage:Stage IIB, alive, 413 days 508.3
TCGA-BR-6710-01A 41 years, male, white, stage:Stage IB, alive, 273 days 379.4
TCGA-HU-A4GH-01A 75 years, male, asian, stage:Stage IA, alive, 358 days 373.8
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA068418
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Adenocarcinoma, NOS

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