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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.1 nTPM
HPA Brain:99.0 nTPM
GTEx:134.1 nTPM
FANTOM5:40.9 Scaled Tags Per Million
Pig:3.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 90.4
1981 Female, age 72, midline 108.9
2048 Male, age 55, midline 94.3
2194 Female, age 79, both hemispheres 86.5
2816 Male, age 47, midline 81.6
2565 Male, age 75, midline 80.9
Cervical spinal cord, dorsal horn
nTPM: 99.0
2173 Female, age 72, unknown 132.9
2296 Male, age 66, both hemispheres 113.6
2069 Male, age 47, both hemispheres 105.1
1877 Male, age 55, unknown 86.7
2721 Male, age 90, both hemispheres 78.3
2297 Male, age 75, both hemispheres 77.3
Cervical spinal cord, ventral horn
nTPM: 96.1
2098 Female, age 72, unknown 117.3
2480 Male, age 75, both hemispheres 104.5
2295 Male, age 66, both hemispheres 99.1
2809 Male, age 90, both hemispheres 90.0
2820 Female, age 79, both hemispheres 84.3
2068 Male, age 55, unknown 81.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 134.1
Samples: 159

Max nTPM: 214.0
Min nTPM: 80.6
Std nTPM: 29.3
Median nTPM: 130.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 214.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 209.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 204.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 203.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 196.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 194.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 192.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 186.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 184.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 183.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 179.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 178.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 177.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 174.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 173.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 172.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 169.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 169.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 168.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 166.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 166.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 166.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 165.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 164.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 163.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 161.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 161.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 161.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 158.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 158.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 157.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 156.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 155.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 155.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 154.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 153.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 153.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 152.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 152.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 152.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 151.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 151.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 150.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 149.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 148.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 148.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 146.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 145.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 144.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 143.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 142.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 139.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 139.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 139.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 138.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 138.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 137.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 136.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 136.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 135.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 134.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 133.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 133.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 133.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 132.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 130.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 130.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 129.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 128.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 128.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 127.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 127.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 126.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 126.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 126.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 125.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 125.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 125.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 124.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 124.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 124.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 124.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 123.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 121.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 121.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 121.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 120.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 120.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 120.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 120.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 118.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 118.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 117.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 115.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 115.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 115.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 115.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 114.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 112.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 112.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 111.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 110.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 110.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 109.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 108.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 108.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 107.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 105.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 104.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 103.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 103.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 103.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 102.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 102.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 100.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 98.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 98.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 96.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 94.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 93.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 91.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 91.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 90.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 90.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 90.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 89.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 87.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 86.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 84.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 81.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.9
FF:10181-103D1 60 years, female 53.9
FF:10159-103A6 76 years, female 27.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.1
Sample A Female 4.5
Sample B Female 2.5
Sample C Male 2.1
Sample D Male 2.5
Ventral spinal cord
nTPM: 3.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.9
Sample A Female 4.2
Sample B Female 2.9
Sample C Male 3.1
Sample D Male 4.3

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