BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:27.0 nTPM
GTEx:11.1 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:9.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 27.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.6
2289 Male, age 61, right hemisphere 29.2
2846 Female, age 79, unknown 25.8
1854 Male, age 80, left hemisphere 25.3
2290 Female, age 72, unknown 25.2
1781 Male, age 74, unknown 24.4
2288 Male, age 75, left hemisphere 24.4
2481 Female, age 94, left hemisphere 21.4
1857 Female, age 85, left hemisphere 21.0
Globus pallidus, externus
nTPM: 21.3
2567 Female, age 72, unknown 26.7
2646 Male, age 61, right hemisphere 23.3
2772 Female, age 79, unknown 20.3
2395 Male, age 75, both hemispheres 18.6
1996 Male, age 80, right hemisphere 17.8
Globus pallidus, internus
nTPM: 21.1
2111 Female, age 85, right hemisphere 25.3
2566 Female, age 72, unknown 23.5
2778 Female, age 91, both hemispheres 22.8
2287 Male, age 75, right hemisphere 20.7
2483 Female, age 94, right hemisphere 19.6
1818 Male, age 74, unknown 18.4
2037 Male, age 80, right hemisphere 17.2
Nucleus accumbens
nTPM: 23.9
2824 Male, age 61, right hemisphere 28.5
1783 Male, age 74, unknown 28.1
1856 Female, age 91, right hemisphere 25.9
1806 Female, age 85, left hemisphere 24.8
2391 Female, age 94, left hemisphere 23.3
2286 Male, age 75, left hemisphere 22.6
2732 Male, age 80, right hemisphere 19.5
2698 Female, age 72, unknown 18.6
Nucleus basalis of Meynert
nTPM: 24.1
2484 Female, age 94, left hemisphere 25.8
2569 Male, age 61, both hemispheres 24.3
2393 Male, age 80, right hemisphere 23.6
2821 Male, age 75, both hemispheres 22.5
Nucleus of the diagonal band
nTPM: 21.3
2029 Male, age 61, right hemisphere 26.5
1979 Male, age 74, unknown 21.4
2195 Female, age 85, both hemispheres 21.0
1812 Female, age 91, both hemispheres 19.1
2775 Male, age 80, right hemisphere 18.7
Putamen
nTPM: 27.0
2489 Female, age 72, unknown 29.9
1838 Male, age 80, right hemisphere 28.8
2466 Female, age 79, unknown 28.5
2647 Male, age 75, left hemisphere 26.3
1829 Male, age 74, unknown 26.2
1937 Female, age 91, right hemisphere 25.6
2482 Female, age 94, left hemisphere 23.6
Septal nuclei
nTPM: 20.5
1960 Male, age 74, unknown 22.3
2394 Male, age 61, left hemisphere 21.6
2629 Female, age 94, right hemisphere 20.9
2031 Female, age 72, unknown 20.3
2199 Male, age 80, right hemisphere 20.3
2009 Female, age 91, both hemispheres 19.7
2059 Female, age 85, both hemispheres 18.6
Stria terminalis, bed nucleus
nTPM: 23.7
2201 Male, age 74, unknown 23.9
1974 Female, age 91, both hemispheres 23.7
2486 Female, age 94, both hemispheres 23.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 11.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.1
Samples: 246

Max nTPM: 16.0
Min nTPM: 5.8
Std nTPM: 1.8
Median nTPM: 11.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 16.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 15.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 14.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 14.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 14.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 14.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 14.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 14.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 14.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 14.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 14.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 15.0
Min nTPM: 5.7
Std nTPM: 1.7
Median nTPM: 9.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 15.0
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 14.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 14.0
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 13.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 13.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 13.3
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 13.3
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 13.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 13.1
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 13.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 13.0
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Brain - Putamen (basal ganglia)
Average nTPM: 10.8
Samples: 205

Max nTPM: 15.1
Min nTPM: 4.7
Std nTPM: 1.9
Median nTPM: 10.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 15.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 15.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 14.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 14.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 14.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 14.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 13.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 13.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 13.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 13.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.6
FF:10164-103B2 76 years, female 16.6
Nucleus accumbens
Scaled Tags Per Million: 10.2
FF:10037-101F1 23-56 years, mixed 10.2
Putamen
Scaled Tags Per Million: 10.2
FF:10176-103C5 60 years, female 10.2
Globus pallidus
Scaled Tags Per Million: 14.1
FF:10161-103A8 76 years, female 14.8
FF:10175-103C4 60 years, female 13.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 7.8
Pig sample Sample description nTPM
Caudate
nTPM: 7.9
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.1
Sample A Female 7.7
Sample B Female 8.1
Sample C Male 8.5
Sample D Male 7.1
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.6
Sample A Female 7.5
Sample B Female 6.6
Sample C Male 7.0
Sample D Male 7.3
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.3
Sample A Female 8.8
Sample B Female 7.4
Sample C Male 7.3
Sample D Male 7.7
Ventral pallidum
nTPM: 7.4
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 7.2
Sample C Male 7.5
Sample D Male 7.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.0
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.4
Sample A Male 8.4
Sample B Male 9.8
Sample C Female 9.0
Sample D Female 8.9
Septum
nTPM: 8.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.6
Sample A Male 8.4
Sample B Male 7.6
Sample C Female 7.7
Sample D Female 8.5
Ventral forebrain
nTPM: 8.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.4
Sample A Male 8.7
Sample B Male 8.5
Sample C Female 7.4
Sample D Female 9.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68844630 Antisense, RP_050222_02_B01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68844630 Antisense, RP_050222_02_B01, Mouse strain C57BL/6J (56 days, male) 0.0

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