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RPLP0
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • STRUCT & INT

  • RPLP0
CANCER STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
STAD TCGA PROTEIN EXPRESSION
ANTIBODIES
AND
VALIDATION
Dictionary
Stomach cancer
Human cancer
Stomach adenocarcinoma
STOMACH ADENOCARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPLP0 is not prognostic in Stomach Adenocarcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 1735.39
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 2341.6
Number of samples 346
Samples
Sample Description pTPM
TCGA-D7-6525-01A 58 years, male, white, stage:Stage IIIA, dead, 406 days 6001.2
TCGA-IN-7806-01A 50 years, male, white, stage:Stage IIB, alive, 1106 days 5932.4
TCGA-BR-8361-01A 71 years, female, white, stage:Stage IIIC, alive, 946 days 5548.4
TCGA-D7-A74A-01A 61 years, female, white, stage:Stage IIIA, alive, 607 days 5505.1
TCGA-BR-8372-01A 63 years, male, white, stage:Stage IIIC, alive, 951 days 5499.5
TCGA-HF-A5NB-01A 75 years, female, stage:Stage IIIC, alive, 928 days 4675.5
TCGA-CG-4444-01A 76 years, male, stage:Stage IIIA, alive, 1431 days 4665.4
TCGA-CD-8528-01A 43 years, female, asian, stage:Stage IIIA, alive, 375 days 4656.9
TCGA-VQ-A8PH-01A 62 years, male, white, stage:Stage IIIB, dead, 389 days 4645.8
TCGA-BR-8589-01A 56 years, male, white, stage:Stage IIIB, alive, 825 days 4637.5
TCGA-CG-5726-01A 73 years, male, stage:Stage IA, dead, 881 days 4625.3
TCGA-CD-8531-01A 66 years, female, asian, stage:Stage IIIA, alive, 383 days 4610.1
TCGA-BR-7717-01A 63 years, male, white, stage:Stage IV, dead, 552 days 4509.6
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:Stage IIIB, alive, 1319 days 4495.9
TCGA-D7-A6EX-01A 72 years, female, white, stage:Stage IIIA, alive, 344 days 4486.5
TCGA-BR-8487-01A 64 years, female, white, stage:Stage IIA, alive, 34 days 4452.0
TCGA-HU-A4H5-01A 71 years, male, asian, stage:Stage IB, alive, 724 days 4333.4
TCGA-VQ-A92D-01A 67 years, male, white, stage:Stage IB, alive, 2032 days 4101.3
TCGA-BR-6455-01A 59 years, male, white, stage:Stage IIB, dead, 422 days 4047.2
TCGA-CG-4469-01A 70 years, male, stage:Stage IV, dead, 215 days 4013.5
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:Stage IIIB, alive, 1000 days 3957.4
TCGA-VQ-A8PU-01A 72 years, female, white, stage:Stage IIIA, dead, 832 days 3881.7
TCGA-BR-4280-01A 78 years, female, white, stage:Stage III, dead, 201 days 3855.3
TCGA-VQ-AA69-01A 35 years, male, white, stage:Stage IIIA, alive, 864 days 3855.1
TCGA-HU-A4G2-01A 45 years, male, asian, stage:Stage IIB, alive, 739 days 3832.6
TCGA-HU-A4GT-01A 71 years, female, asian, stage:Stage IIA, alive, 198 days 3812.6
TCGA-D7-6527-01A 62 years, male, white, stage:Stage II, dead, 312 days 3721.3
TCGA-BR-7707-01A 69 years, female, white, stage:Stage IB, alive, 1090 days 3665.6
TCGA-CD-8535-01A 59 years, male, asian, stage:Stage IIIA, alive, 390 days 3658.4
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:Stage IIIC, dead, 3 days 3581.7
TCGA-KB-A6F7-01A 54 years, female, stage:Stage IB, alive, 1935 days 3577.0
TCGA-F1-6875-01A 79 years, male, black or african american, stage:Stage IA, dead, 2197 days 3548.3
TCGA-CG-5720-01A 71 years, male, stage:Stage IB, dead, 30 days 3389.6
TCGA-D7-5578-01A 80 years, male, white, stage:Stage IIIA, alive, 385 days 3348.6
TCGA-VQ-A928-01A 49 years, male, white, stage:Stage IV, dead, 174 days 3344.6
TCGA-BR-6566-01A 64 years, female, white, stage:Stage IIA, alive, 997 days 3330.0
TCGA-CG-4465-01A 69 years, female, stage:Stage IV, dead, 274 days 3316.3
TCGA-BR-8680-01A 45 years, male, asian, stage:Stage IV, alive, 972 days 3314.3
TCGA-BR-8381-01A 51 years, male, white, stage:Stage IIB, alive, 224 days 3306.4
TCGA-CG-5724-01A 59 years, male, stage:Stage IV, dead, 366 days 3300.8
TCGA-HU-8604-01A 82 years, female, asian, stage:Stage IIA, alive, 694 days 3283.5
TCGA-B7-A5TI-01A 52 years, male, white, stage:Stage IIIC, alive, 595 days 3251.4
TCGA-VQ-A8PE-01A 78 years, male, white, stage:Stage IIIB, dead, 675 days 3236.2
TCGA-CD-5803-01A 78 years, female, asian, stage:Stage II, dead, 341 days 3225.5
TCGA-BR-8059-01A 72 years, male, white, stage:Stage III, dead, 439 days 3217.9
TCGA-HU-8602-01A 58 years, female, asian, stage:Stage IIB, alive, 679 days 3205.2
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:Stage IV, dead, 262 days 3197.7
TCGA-VQ-A91Z-01A 67 years, female, white, stage:Stage IIIA, alive, 1690 days 3179.0
TCGA-VQ-A8E3-01A 79 years, male, white, stage:Stage IIA, dead, 661 days 3178.8
TCGA-F1-A72C-01A 68 years, male, asian, stage:Stage IIA, alive, 346 days 3172.9
TCGA-D7-A6EY-01A 72 years, female, white, stage:Stage IIIB, dead, 348 days 3166.1
TCGA-D7-6815-01A 70 years, female, white, stage:Stage IIB, alive, 486 days 3164.3
TCGA-HJ-7597-01A 71 years, female, white, stage:Stage IB, dead, 805 days 3144.6
TCGA-CG-4306-01A 90 years, male, stage:Stage IV, dead, 1 days 3144.1
TCGA-CD-5813-01A 60 years, male, asian, stage:Stage II, dead, 377 days 3137.2
TCGA-VQ-A8PP-01A 76 years, male, stage:Stage IV, dead, 712 days 3134.8
TCGA-HF-7133-01A female, stage:Stage IV, alive, 1918 days 3130.0
TCGA-VQ-A94T-01A 73 years, male, stage:Stage IIIB, dead, 342 days 3117.1
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:Stage IV, dead, 259 days 3107.4
TCGA-R5-A7ZI-01A 44 years, female, white, stage:Stage IV, alive, 2267 days 3072.9
TCGA-BR-4201-01A 66 years, female, white, stage:'--, dead, 940 days 3065.8
TCGA-VQ-A8PJ-01A 53 years, male, stage:Stage IV, dead, 82 days 3063.0
TCGA-CG-5722-01A 67 years, female, stage:Stage IV, alive, 30 days 3055.7
TCGA-CG-4437-01A 83 years, male, stage:Stage II, alive, 245 days 3053.0
TCGA-RD-A7C1-01A 82 years, male, white, stage:Stage IB, dead, 507 days 3051.1
TCGA-BR-8678-01A 76 years, male, white, stage:Stage IB, alive, 754 days 3047.6
TCGA-VQ-A8P2-01A 68 years, male, white, stage:Stage IIIA, alive, 1160 days 3047.4
TCGA-BR-4257-01A 79 years, female, white, stage:'--, dead, 294 days 3041.8
TCGA-BR-8077-01A 58 years, female, white, stage:Stage IIIB, alive, 21 days 3032.1
TCGA-CD-8534-01A 41 years, male, asian, stage:Stage II, alive, 367 days 3023.7
TCGA-MX-A666-01A 61 years, male, white, stage:Stage IIA, alive, 427 days 3005.1
TCGA-D7-A4YX-01A 63 years, male, white, stage:Stage IIB, alive, 1108 days 3001.6
TCGA-BR-6707-01A 75 years, male, white, stage:Stage IIA, dead, 605 days 2989.8
TCGA-BR-7957-01A 50 years, female, white, stage:Stage IV, dead, 276 days 2980.7
TCGA-VQ-A91N-01A 59 years, female, stage:Stage IV, dead, 570 days 2961.4
TCGA-D7-6528-01A 70 years, female, white, stage:Stage IB, alive, 463 days 2953.5
TCGA-VQ-A94R-01A 63 years, male, white, stage:'--, dead, 1294 days 2951.5
TCGA-IN-A6RN-01A 72 years, female, white, stage:Stage IIA, alive, 594 days 2947.6
TCGA-BR-8286-01A 49 years, male, white, stage:Stage II, alive, 895 days 2918.2
TCGA-CG-5721-01A 58 years, male, stage:Stage IV, alive, 183 days 2900.4
TCGA-CD-8533-01A 48 years, male, asian, stage:Stage II, alive, 468 days 2900.1
TCGA-CD-5799-01A 45 years, male, asian, stage:Stage II, alive, 396 days 2894.2
TCGA-BR-4256-01A 80 years, male, white, stage:'--, dead, 284 days 2876.0
TCGA-VQ-A94U-01A 70 years, male, white, stage:Stage IIB, alive, 819 days 2872.5
TCGA-VQ-A8PB-01A 65 years, female, white, stage:Stage II, dead, 1043 days 2866.2
TCGA-VQ-A8PO-01A 74 years, male, white, stage:Stage IIB, dead, 282 days 2863.9
TCGA-B7-5818-01A 62 years, male, white, stage:Stage IB, alive, 356 days 2855.3
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:Stage III, dead, 185 days 2854.0
TCGA-BR-6453-01A 54 years, male, white, stage:Stage IIA, alive, 485 days 2836.1
TCGA-SW-A7EB-01A 45 years, male, white, stage:Stage IIIA, alive, 176 days 2832.2
TCGA-BR-8682-01A 52 years, male, asian, stage:Stage IIB, alive, 991 days 2829.7
TCGA-D7-6519-01A 64 years, female, white, stage:'--, alive, 625 days 2829.5
TCGA-BR-4267-01A 51 years, male, white, stage:Stage IB, dead, 188 days 2816.1
TCGA-D7-8573-01A 57 years, male, white, stage:Stage IIA, alive, 593 days 2814.8
TCGA-HU-8244-01A 77 years, female, asian, stage:Stage IA, alive, 742 days 2814.5
TCGA-CG-4440-01A 68 years, female, stage:Stage IV, dead, 122 days 2792.5
TCGA-VQ-A91X-01A 74 years, male, white, stage:Stage IIIB, dead, 289 days 2780.8
TCGA-D7-6526-01A 67 years, female, white, stage:Stage IIIA, alive, 523 days 2779.9
TCGA-BR-4279-01A 43 years, male, white, stage:Stage II, dead, 291 days 2779.9
TCGA-VQ-A8DU-01A 63 years, male, white, stage:Stage IIIA, dead, 166 days 2779.5
TCGA-CD-8530-01A 51 years, male, asian, stage:Stage II, alive, 377 days 2745.2
TCGA-IN-A6RJ-01A 64 years, male, white, stage:Stage IA, alive, 379 days 2721.7
TCGA-MX-A5UJ-01A 86 years, female, white, stage:Stage IIIA, alive, 600 days 2714.7
TCGA-SW-A7EA-01A 61 years, female, white, stage:Stage IB, alive, 579 days 2708.6
TCGA-BR-8081-01A 71 years, female, white, stage:Stage IIB, alive, 981 days 2708.3
TCGA-HU-A4GF-01A 69 years, male, asian, stage:Stage IIA, alive, 785 days 2678.3
TCGA-BR-8289-01A 57 years, male, white, stage:Stage IV, dead, 81 days 2677.8
TCGA-BR-6705-01A 68 years, female, white, stage:Stage IIIB, dead, 779 days 2677.5
TCGA-CG-4438-01A 56 years, male, stage:Stage IV, alive, 1645 days 2668.2
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:Stage IIIB, alive, 838 days 2642.9
TCGA-BR-7851-01A 74 years, male, white, stage:Stage IIB, dead, 574 days 2633.2
TCGA-F1-6874-01A 79 years, male, white, stage:Stage IB, alive, 440 days 2623.1
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:Stage IIIC, dead, 640 days 2613.7
TCGA-HU-A4H4-01A 53 years, female, asian, stage:Stage IIB, alive, 725 days 2612.4
TCGA-RD-A8N6-01A 78 years, female, white, stage:Stage IIIA, dead, 272 days 2612.3
TCGA-HU-A4GU-01A 73 years, male, asian, stage:Stage IIB, alive, 200 days 2609.7
TCGA-BR-8295-01A 60 years, female, white, stage:Stage IIB, dead, 67 days 2607.9
TCGA-D7-6522-01A 58 years, male, white, stage:Stage IB, alive, 566 days 2595.8
TCGA-BR-A4J4-01A 39 years, male, asian, stage:Stage IIIB, alive, 16 days 2588.4
TCGA-B7-A5TN-01A 60 years, male, white, stage:Stage IIB, alive, 287 days 2575.9
TCGA-BR-7716-01A 62 years, female, white, stage:Stage IIB, alive, 1210 days 2572.9
TCGA-BR-7715-01A 65 years, male, white, stage:Stage IIA, alive, 1023 days 2550.3
TCGA-IN-8663-01A 68 years, male, white, stage:Stage IIB, dead, 103 days 2549.7
TCGA-BR-8591-01A 79 years, male, white, stage:Stage IIIC, alive, 856 days 2537.7
TCGA-CG-5719-01A 54 years, female, stage:Stage IV, alive, 31 days 2527.7
TCGA-BR-8368-01A 84 years, female, white, stage:Stage IB, alive, 131 days 2517.5
TCGA-BR-6709-01A 57 years, female, white, stage:Stage IIIB, dead, 370 days 2516.2
TCGA-BR-A4PF-01A 72 years, male, white, stage:Stage IIIB, alive, 35 days 2508.8
TCGA-VQ-A924-01A 69 years, male, stage:Stage II, dead, 1686 days 2494.6
TCGA-VQ-A922-01A 70 years, male, stage:Stage IV, dead, 275 days 2493.1
TCGA-HF-7134-01A male, stage:Stage IA, alive, 1588 days 2493.1
TCGA-BR-8676-01A 59 years, male, white, stage:Stage IIIB, alive, 229 days 2491.7
TCGA-CG-4441-01A 83 years, male, stage:Stage IIIA, dead, 426 days 2487.0
TCGA-IN-A6RS-01A 76 years, male, white, stage:Stage IA, alive, 383 days 2468.6
TCGA-VQ-A91A-01A 67 years, male, white, stage:Stage IIIB, alive, 1200 days 2466.4
TCGA-BR-7197-01A 69 years, male, white, stage:Stage II, alive, 280 days 2449.2
TCGA-IN-A7NU-01A 69 years, male, white, stage:Stage IIIB, alive, 356 days 2441.8
TCGA-CG-4305-01A 69 years, male, stage:Stage II, alive, 485 days 2433.5
TCGA-D7-8575-01A 75 years, male, white, stage:Stage IIIA, dead, 554 days 2428.6
TCGA-RD-A8N5-01A 78 years, male, white, stage:Stage IIIA, dead, 1747 days 2427.0
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:Stage IV, dead, 476 days 2402.8
TCGA-CG-5723-01A 83 years, male, stage:Stage II, alive, 2496 days 2394.7
TCGA-BR-8058-01A 53 years, female, white, stage:Stage IIIB, alive, 1133 days 2394.7
TCGA-CD-5798-01A 82 years, male, asian, stage:Stage II, alive, 408 days 2391.2
TCGA-BR-4191-01A 72 years, male, white, stage:'--, dead, 558 days 2380.3
TCGA-IN-AB1X-01A 78 years, female, white, stage:Stage IIA, alive, 411 days 2375.5
TCGA-HU-A4GX-01A 70 years, female, asian, stage:Stage IIIC, alive, 616 days 2371.5
TCGA-HU-8238-01A 56 years, male, asian, stage:'--, alive, 46 days 2364.4
TCGA-BR-6803-01A 54 years, female, white, stage:Stage IIA, alive, 949 days 2363.2
TCGA-BR-A4QL-01A 75 years, female, white, stage:Stage IIIB, dead, 491 days 2358.6
TCGA-BR-7959-01A 59 years, male, white, stage:Stage IIIA, alive, 1010 days 2343.8
TCGA-CD-A4MG-01A 76 years, male, asian, stage:Stage IIA, dead, 200 days 2341.4
TCGA-BR-8366-01A 80 years, female, white, stage:Stage IIA, alive, 29 days 2338.7
TCGA-VQ-A8P5-01A 67 years, male, white, stage:Stage IIA, dead, 235 days 2316.5
TCGA-D7-A6F0-01A 79 years, female, white, stage:Stage IB, alive, 678 days 2314.0
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:Stage IV, dead, 396 days 2293.3
TCGA-HU-A4G9-01A 67 years, female, asian, stage:Stage IA, alive, 736 days 2292.7
TCGA-IN-AB1V-01A 63 years, male, white, stage:Stage IA, alive, 479 days 2290.4
TCGA-VQ-A8DV-01A 48 years, male, white, stage:Stage IB, dead, 403 days 2284.3
TCGA-HF-7132-01A male, stage:Stage II, alive, 2351 days 2283.2
TCGA-VQ-A8DT-01A 43 years, male, stage:Stage IIIB, alive, 1484 days 2280.6
TCGA-D7-A6EV-01A 71 years, female, white, stage:Stage IIB, alive, 342 days 2279.0
TCGA-D7-5577-01A 53 years, female, white, stage:Stage IIIA, dead, 782 days 2278.4
TCGA-BR-6563-01A 60 years, male, white, stage:Stage IIB, alive, 1190 days 2271.7
TCGA-CD-8527-01A 72 years, female, asian, stage:Stage II, dead, 218 days 2258.8
TCGA-BR-6452-01A 78 years, female, white, stage:Stage IIA, alive, 1055 days 2252.8
TCGA-BR-6457-01A 69 years, male, white, stage:Stage IIA, alive, 416 days 2247.8
TCGA-HU-8249-01A 76 years, male, asian, stage:Stage IIIA, alive, 881 days 2246.1
TCGA-CD-A48C-01A 79 years, female, asian, stage:Stage IIB, dead, 353 days 2241.2
TCGA-VQ-AA6F-01A 57 years, male, white, stage:Stage IIB, alive, 1646 days 2220.4
TCGA-BR-8683-01A 75 years, male, asian, stage:Stage IIIB, dead, 300 days 2216.7
TCGA-HU-A4H0-01A 72 years, male, asian, stage:Stage IIIC, alive, 64 days 2213.5
TCGA-D7-8572-01A 57 years, male, white, stage:Stage IIB, alive, 511 days 2210.2
TCGA-CD-8532-01A 52 years, male, asian, stage:Stage II, dead, 354 days 2206.1
TCGA-BR-7723-01A 59 years, male, white, stage:Stage IIIB, dead, 874 days 2180.0
TCGA-BR-A44U-01A 70 years, male, white, stage:Stage IIIB, dead, 422 days 2171.9
TCGA-MX-A5UG-01A 78 years, male, asian, stage:Stage IIIA, dead, 113 days 2171.2
TCGA-IN-A7NR-01A 64 years, female, white, stage:Stage IV, alive, 198 days 2168.2
TCGA-BR-4253-01A 80 years, female, white, stage:Stage IIIA, dead, 124 days 2160.5
TCGA-BR-8367-01A 55 years, male, white, stage:Stage IIIB, dead, 801 days 2159.0
TCGA-BR-8590-01A 62 years, male, white, stage:Stage IIIC, dead, 284 days 2149.7
TCGA-BR-8284-01A 72 years, female, white, stage:Stage IIIC, dead, 245 days 2132.4
TCGA-HU-8608-01A 70 years, male, asian, stage:Stage IIIB, alive, 641 days 2126.7
TCGA-VQ-A8PX-01A 51 years, male, stage:Stage IA, alive, 1964 days 2119.6
TCGA-D7-6524-01A 53 years, male, white, stage:Stage II, alive, 543 days 2118.4
TCGA-BR-8677-01A 74 years, female, white, stage:Stage IIIB, alive, 813 days 2110.6
TCGA-CG-5732-01A 66 years, male, stage:Stage IV, dead, 2100 days 2098.9
TCGA-BR-8380-01A 55 years, male, white, stage:Stage IIIC, dead, 21 days 2097.8
TCGA-MX-A663-01A 66 years, male, white, stage:Stage IIA, dead, 300 days 2095.0
TCGA-BR-4187-01A 56 years, male, white, stage:'--, dead, 141 days 2088.7
TCGA-RD-A8N9-01A 63 years, female, asian, stage:Stage II, alive, 1083 days 2068.1
TCGA-VQ-A91K-01A 69 years, male, white, stage:Stage IIIA, alive, 1862 days 2064.0
TCGA-VQ-A925-01A 66 years, male, white, stage:Stage IIIA, dead, 138 days 2063.3
TCGA-B7-A5TJ-01A 74 years, male, white, stage:Stage IIB, alive, 335 days 2059.6
TCGA-D7-8576-01A 54 years, female, white, stage:Stage IIIB, dead, 446 days 2059.4
TCGA-HU-8610-01A 75 years, male, asian, stage:Stage IA, alive, 23 days 2056.7
TCGA-BR-6458-01A 57 years, female, white, stage:Stage IIB, dead, 588 days 2049.7
TCGA-BR-6565-01A 67 years, male, white, stage:Stage IIB, dead, 279 days 2046.6
TCGA-BR-7196-01A 64 years, male, white, stage:Stage IV, alive, 666 days 2011.0
TCGA-VQ-AA6G-01A 68 years, male, white, stage:Stage IIA, dead, 792 days 2008.2
TCGA-CG-4477-01A 58 years, female, stage:Stage IB, alive, 942 days 2006.4
TCGA-CG-4466-01A 81 years, female, stage:Stage IB, alive, 577 days 1999.0
TCGA-CG-4460-01A 66 years, female, stage:Stage IV, dead, 669 days 1990.9
TCGA-D7-A6EZ-01A 66 years, male, white, stage:Stage IIIA, dead, 618 days 1975.2
TCGA-BR-8365-01A 70 years, female, white, stage:Stage IIA, dead, 533 days 1972.9
TCGA-CD-A48A-01A 57 years, male, asian, stage:Stage IIA, alive, 378 days 1972.5
TCGA-IN-7808-01A 59 years, male, white, stage:'--, dead, 105 days 1972.3
TCGA-BR-8484-01A 61 years, male, white, stage:Stage IIIA, dead, 766 days 1972.0
TCGA-RD-A7BS-01A 46 years, male, white, stage:Stage IIIA, dead, 336 days 1966.5
TCGA-CG-5718-01A 78 years, female, stage:Stage II, dead, 1095 days 1965.5
TCGA-VQ-A8PD-01A 69 years, male, white, stage:Stage IIIC, dead, 496 days 1961.6
TCGA-CD-5801-01A 69 years, male, asian, stage:Stage IIIA, dead, 401 days 1949.6
TCGA-BR-6801-01A 70 years, male, white, stage:Stage IIA, alive, 1223 days 1943.7
TCGA-CG-5717-01A 58 years, male, stage:Stage II, dead, 212 days 1932.2
TCGA-HU-A4GC-01A 74 years, male, asian, stage:Stage IIIB, alive, 99 days 1927.8
TCGA-ZA-A8F6-01A 71 years, male, white, stage:Stage IB, alive, 525 days 1923.9
TCGA-HU-A4GP-01A 62 years, female, asian, stage:Stage IIA, alive, 273 days 1920.9
TCGA-HU-A4G3-01A 54 years, male, asian, stage:Stage IIB, alive, 170 days 1909.4
TCGA-CD-A487-01A 51 years, male, asian, stage:Stage IIB, alive, 374 days 1907.5
TCGA-VQ-A91E-01A 67 years, female, white, stage:Stage IIIB, alive, 664 days 1906.9
TCGA-IN-A6RI-01A 45 years, male, white, stage:Stage I, alive, 559 days 1901.5
TCGA-VQ-A8PC-01A 65 years, male, white, stage:Stage IIIA, dead, 1407 days 1897.2
TCGA-BR-8291-01A 61 years, male, white, stage:Stage IIB, dead, 607 days 1895.1
TCGA-D7-6822-01A 77 years, male, white, stage:Stage IB, alive, 375 days 1888.1
TCGA-BR-8485-01A 68 years, female, white, stage:Stage IIIC, alive, 280 days 1887.6
TCGA-BR-6564-01A 46 years, female, white, stage:Stage IIIA, dead, 794 days 1887.0
TCGA-D7-A4YU-01A 73 years, male, white, stage:Stage IIIB, alive, 500 days 1872.1
TCGA-BR-8588-01A 55 years, female, white, stage:Stage IIB, alive, 389 days 1867.6
TCGA-CD-A4MH-01A 86 years, female, asian, stage:Stage IIA, alive, 371 days 1860.0
TCGA-IN-A6RR-01A 84 years, male, white, stage:'--, dead, 205 days 1855.7
TCGA-FP-A9TM-01A 77 years, male, white, stage:'--, alive, 189 days 1834.6
TCGA-CD-8526-01A 73 years, female, asian, stage:Stage IIIA, alive, 381 days 1822.4
TCGA-FP-A8CX-01A 60 years, male, white, stage:Stage IIIC, alive, 7 days 1817.3
TCGA-VQ-A91Q-01A 61 years, male, stage:Stage IV, dead, 633 days 1806.6
TCGA-VQ-A8PK-01A 58 years, male, white, stage:Stage IIIB, dead, 543 days 1798.3
TCGA-D7-6521-01A 65 years, male, white, stage:'--, alive, 564 days 1797.7
TCGA-CG-5725-01A 72 years, male, stage:Stage IB, dead, 457 days 1795.7
TCGA-VQ-A8PF-01A 76 years, male, stage:Stage IIIB, dead, 76 days 1794.1
TCGA-IN-A6RL-01A 84 years, male, white, stage:'--, dead, 406 days 1787.3
TCGA-RD-A7BW-01A 68 years, female, white, stage:Stage IB, dead, 156 days 1783.4
TCGA-BR-8686-01A 69 years, male, asian, stage:Stage IIIB, dead, 635 days 1781.1
TCGA-FP-8210-01A 48 years, male, asian, stage:Stage IIIA, dead, 153 days 1777.3
TCGA-VQ-AA6A-01A 56 years, male, white, stage:Stage IIIC, alive, 1184 days 1772.5
TCGA-B7-A5TK-01A 51 years, male, white, stage:Stage IIIA, alive, 288 days 1767.3
TCGA-RD-A8NB-01A 80 years, female, white, stage:Stage IIIA, dead, 513 days 1766.3
TCGA-D7-A748-01A 41 years, female, white, stage:Stage IV, dead, 132 days 1757.6
TCGA-BR-7958-01A 60 years, male, white, stage:Stage IIIB, alive, 899 days 1754.3
TCGA-FP-8099-01A 79 years, male, white, stage:Stage IIA, alive, 519 days 1750.2
TCGA-CD-A486-01A 68 years, male, asian, stage:Stage IIA, dead, 192 days 1749.8
TCGA-BR-8296-01A 58 years, female, white, stage:Stage IIIC, dead, 474 days 1736.5
TCGA-BR-8382-01A 67 years, female, white, stage:Stage IIIC, dead, 762 days 1735.4
TCGA-CG-4301-01A 75 years, female, stage:Stage IV, alive, 92 days 1729.6
TCGA-HU-A4H3-01A 56 years, female, asian, stage:Stage IIIC, alive, 882 days 1721.5
TCGA-VQ-AA6D-01A 52 years, female, stage:Stage IIIA, alive, 521 days 1708.3
TCGA-HU-A4GD-01A 56 years, male, asian, stage:Stage IIB, alive, 692 days 1699.2
TCGA-HU-A4HB-01A 68 years, male, asian, stage:Stage IIB, dead, 477 days 1690.1
TCGA-BR-8080-01A 72 years, female, white, stage:Stage IIIC, dead, 292 days 1683.5
TCGA-BR-8364-01A 42 years, female, white, stage:Stage IIIC, alive, 675 days 1681.9
TCGA-KB-A93H-01A 79 years, female, asian, stage:Stage IIB, alive, 1145 days 1677.9
TCGA-D7-6818-01A 53 years, male, white, stage:Stage IIIA, dead, 376 days 1660.2
TCGA-BR-8369-01A 76 years, female, white, stage:Stage IIIB, alive, 427 days 1657.5
TCGA-HU-A4HD-01A 73 years, male, asian, stage:Stage IIIA, alive, 1016 days 1655.8
TCGA-KB-A93G-01A 68 years, male, white, stage:Stage IB, alive, 613 days 1650.3
TCGA-CG-4475-01A 76 years, male, stage:Stage IIB, alive, 699 days 1642.5
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:Stage IIIC, alive, 650 days 1641.0
TCGA-HU-A4G8-01A 71 years, female, asian, stage:Stage IIB, alive, 690 days 1634.6
TCGA-BR-6456-01A 74 years, female, white, stage:Stage IIB, dead, 526 days 1627.7
TCGA-BR-8687-01A 67 years, female, white, stage:Stage IIIC, dead, 250 days 1598.8
TCGA-BR-7722-01A 62 years, male, white, stage:Stage IIB, dead, 466 days 1598.3
TCGA-BR-8373-01A 65 years, female, white, stage:Stage IIIA, alive, 450 days 1587.9
TCGA-CG-4436-01A 57 years, male, stage:Stage IB, alive, 243 days 1586.7
TCGA-BR-8297-01A 58 years, male, white, stage:Stage IIIC, alive, 225 days 1584.1
TCGA-IN-8462-01A 80 years, male, white, stage:Stage IIB, alive, 572 days 1560.5
TCGA-BR-A4CS-01A 77 years, male, white, stage:Stage IIIC, dead, 45 days 1555.4
TCGA-3M-AB46-01A 70 years, male, white, stage:Stage IB, alive, 1765 days 1547.7
TCGA-BR-8592-01A 63 years, female, white, stage:Stage IIIB, dead, 191 days 1542.1
TCGA-EQ-8122-01A 71 years, female, white, stage:Stage IIB, dead, 243 days 1537.2
TCGA-RD-A8N1-01A 70 years, male, white, stage:Stage IIIB, alive, 3519 days 1533.4
TCGA-BR-8690-01A 54 years, female, white, stage:Stage IIIB, alive, 325 days 1528.4
TCGA-RD-A8MV-01A 56 years, male, white, stage:Stage IIIB, alive, 3720 days 1523.1
TCGA-CD-8525-01A 82 years, female, asian, stage:Stage IIIA, alive, 383 days 1507.5
TCGA-IP-7968-01A 74 years, male, white, stage:Stage IIIB, alive, 77 days 1507.0
TCGA-FP-7735-01A 77 years, male, black or african american, stage:Stage IB, dead, 106 days 1506.1
TCGA-BR-7901-01A 74 years, male, white, stage:Stage IIB, dead, 105 days 1505.5
TCGA-CD-8524-01A 61 years, female, asian, stage:Stage II, alive, 388 days 1505.5
TCGA-D7-8574-01A 72 years, male, white, stage:Stage IIIA, alive, 523 days 1505.4
TCGA-VQ-A927-01A 81 years, male, white, stage:Stage IIIB, dead, 200 days 1502.8
TCGA-D7-8570-01A 44 years, male, white, stage:Stage IIIB, alive, 752 days 1489.0
TCGA-BR-A4J8-01A 71 years, female, white, stage:Stage IIIB, alive, 411 days 1487.1
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:Stage IIB, alive, 942 days 1481.0
TCGA-VQ-A91U-01A 78 years, male, asian, stage:Stage IIIA, dead, 52 days 1476.4
TCGA-BR-6852-01A 64 years, female, white, stage:Stage IIA, alive, 1367 days 1473.9
TCGA-FP-8209-01A 49 years, male, white, stage:Stage IB, dead, 1811 days 1469.4
TCGA-CD-5800-01A 51 years, female, asian, stage:Stage II, alive, 400 days 1465.4
TCGA-VQ-A8P3-01A 72 years, male, white, stage:Stage IIIA, alive, 1132 days 1454.5
TCGA-D7-A6F2-01A 62 years, male, white, stage:Stage IB, alive, 476 days 1453.3
TCGA-VQ-AA6K-01A 59 years, male, white, stage:Stage IIIC, dead, 378 days 1452.5
TCGA-IN-A7NT-01A 73 years, female, white, stage:Stage IIB, alive, 323 days 1451.8
TCGA-BR-8384-01A 69 years, male, white, stage:Stage IIIC, alive, 113 days 1451.1
TCGA-FP-A4BF-01A 68 years, male, white, stage:Stage IIIA, dead, 168 days 1410.7
TCGA-VQ-A94P-01A 57 years, male, white, stage:'--, dead, 81 days 1407.0
TCGA-VQ-A91Y-01A 67 years, male, white, stage:Stage IIIC, dead, 296 days 1403.2
TCGA-BR-A4IV-01A 47 years, male, asian, stage:Stage IIIB, dead, 869 days 1393.3
TCGA-D7-8579-01A 66 years, female, white, stage:Stage IIB, alive, 636 days 1381.3
TCGA-RD-A8MW-01A 72 years, male, white, stage:Stage IIIB, dead, 1153 days 1378.0
TCGA-BR-A4J6-01A 69 years, female, white, stage:Stage IIA, alive, 20 days 1376.8
TCGA-CD-8529-01A 65 years, male, asian, stage:Stage IV, alive, 374 days 1375.4
TCGA-BR-6802-01A 65 years, male, white, stage:Stage IIIA, alive, 940 days 1375.0
TCGA-R5-A7O7-01A 51 years, male, white, stage:Stage IV, alive, 1389 days 1374.4
TCGA-FP-7998-01A 77 years, male, white, stage:Stage IIIC, alive, 678 days 1353.5
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:Stage IIIC, dead, 24 days 1344.8
TCGA-VQ-A8PM-01A 56 years, male, white, stage:Stage IV, dead, 57 days 1327.1
TCGA-BR-A4J5-01A 56 years, male, asian, stage:Stage IIIA, alive, 862 days 1312.4
TCGA-BR-A4J9-01A 55 years, male, white, stage:Stage IIA, alive, 14 days 1304.9
TCGA-FP-8631-01A 68 years, male, white, stage:Stage IIIA, alive, 17 days 1282.6
TCGA-BR-8371-01A 62 years, male, white, stage:Stage IIIB, dead, 359 days 1281.0
TCGA-VQ-AA68-01A 52 years, female, white, stage:Stage IIIC, alive, 1328 days 1277.4
TCGA-HU-A4GY-01A 76 years, female, asian, stage:Stage IIIA, alive, 8 days 1277.4
TCGA-F1-A448-01A 70 years, male, white, stage:Stage IIIB, alive, 647 days 1277.1
TCGA-BR-A44T-01A 53 years, female, white, stage:Stage IIA, alive, 1038 days 1276.6
TCGA-BR-A4J7-01A 49 years, male, asian, stage:Stage IIB, alive, 989 days 1272.7
TCGA-VQ-A91V-01A 58 years, male, stage:Stage IIIA, alive, 1297 days 1261.7
TCGA-D7-A747-01A 57 years, male, white, stage:Stage IIB, dead, 255 days 1255.5
TCGA-HU-A4H6-01A 72 years, female, asian, stage:Stage IIIA, alive, 644 days 1252.8
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:Stage IIIA, dead, 562 days 1248.3
TCGA-VQ-AA64-01A 68 years, male, white, stage:Stage IIIB, dead, 560 days 1199.3
TCGA-BR-8483-01A 59 years, male, white, stage:Stage IIIA, alive, 164 days 1198.3
TCGA-RD-A8N0-01A 53 years, female, white, stage:Stage IIIB, alive, 1236 days 1187.1
TCGA-BR-8060-01A 75 years, female, white, stage:Stage IIB, dead, 348 days 1180.6
TCGA-CD-A489-01A 58 years, male, asian, stage:Stage IIA, dead, 344 days 1179.1
TCGA-FP-7829-01A 69 years, male, white, stage:Stage IIB, alive, 594 days 1170.0
TCGA-FP-7916-01A 77 years, male, asian, stage:Stage IIIC, dead, 428 days 1160.8
TCGA-HU-A4H2-01A 58 years, female, asian, stage:Stage IIIB, alive, 394 days 1157.0
TCGA-R5-A805-01A 71 years, male, white, stage:Stage IIIB, dead, 281 days 1151.3
TCGA-D7-A4Z0-01A 60 years, female, white, stage:Stage IIB, alive, 449 days 1145.7
TCGA-KB-A93J-01A 78 years, male, white, stage:Stage II, alive, 1124 days 1140.6
TCGA-CG-5734-01A 68 years, male, stage:Stage IIIA, dead, 243 days 1090.9
TCGA-FP-8211-01A 62 years, male, white, stage:Stage IIB, alive, 413 days 1045.1
TCGA-BR-7704-01A 69 years, female, white, stage:Stage II, alive, 1072 days 1042.1
TCGA-D7-8578-01A 72 years, male, white, stage:Stage IB, alive, 643 days 1026.9
TCGA-RD-A8N4-01A 58 years, female, white, stage:Stage IIIA, alive, 2171 days 988.4
TCGA-D7-6520-01A 53 years, male, white, stage:Stage IIIA, alive, 573 days 986.3
TCGA-CG-4443-01A 68 years, male, stage:Stage IA, alive, 912 days 956.1
TCGA-RD-A8N2-01A 59 years, female, white, stage:Stage IB, alive, 3540 days 748.9
TCGA-BR-6710-01A 41 years, male, white, stage:Stage IB, alive, 273 days 711.2
TCGA-HU-A4GH-01A 75 years, male, asian, stage:Stage IA, alive, 358 days 694.1
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA003512

Antibody HPA073501
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Adenocarcinoma, NOS
Adenocarcinoma, NOS
Adenocarcinoma, High grade

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