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  • RPH3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:36.9 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:39.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002475
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 145.2
Min nTPM: 3.0
Std nTPM: 22.5
Median nTPM: 33.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 145.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 109.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 97.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 88.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 84.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 83.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 80.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 80.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 78.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 78.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 75.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 74.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 70.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 69.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 69.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 69.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 69.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 68.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 68.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 66.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 66.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 66.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 66.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 66.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 63.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 62.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 62.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 62.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 61.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 61.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 60.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 59.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 58.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 58.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 58.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 58.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 57.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 57.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 55.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 54.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 54.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 54.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 54.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 54.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 53.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 53.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 52.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 52.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 52.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 51.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 51.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 50.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 50.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 50.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 50.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 49.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 49.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 48.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 48.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 48.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 48.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 47.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 47.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 47.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 47.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 46.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 46.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 45.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 45.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 45.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 45.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 44.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 44.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 44.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 44.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 43.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 43.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 42.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 42.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 42.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 42.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 41.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 40.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 40.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 39.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 39.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 39.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 39.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 39.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 39.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 38.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 38.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 38.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 38.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 38.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 37.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 36.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 36.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 36.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 36.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 36.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 35.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 34.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 34.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 34.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 33.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 33.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 33.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 33.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 32.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 32.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 31.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 31.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 31.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 30.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 30.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 30.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 30.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 29.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 29.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 28.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 28.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 28.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 28.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 27.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 27.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 27.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 26.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 26.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 26.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 26.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 26.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 25.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 25.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 25.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 24.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 24.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 24.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 24.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 24.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 24.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 24.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 23.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 23.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 23.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 23.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 22.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 22.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 22.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 22.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 21.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 21.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 21.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 21.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 21.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 21.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 21.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 20.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 20.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 19.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 19.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 19.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 18.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 18.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 18.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 18.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 17.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 17.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 17.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 17.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 17.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 17.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 16.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 15.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 15.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 15.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 15.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 14.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 14.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 14.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 14.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 14.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 14.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 14.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 13.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 13.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 13.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 12.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 12.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 12.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 12.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 12.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 11.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 11.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 11.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 11.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 10.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 10.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 10.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 9.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 9.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 8.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 7.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 7.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 5.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 5.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.3
FF:10164-103B2 76 years, female 30.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.7
Pig sample Sample description nTPM
Caudate
nTPM: 39.8
Samples: 4

Max nTPM: 60.5
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 31.4
Sample C Male 60.5
Sample D Male 47.1

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